Miyakogusa Predicted Gene
- Lj1g3v2125960.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SRP0_MEDTR |
124 |
90.8 |
95.4 |
(tr|I3SRP0) Uncharacterized protein OS=Medicago truncatula PE=2 SV=1 |
| TAIR_pep |
AT2G21600.1 |
100 |
74.6 |
86.4 |
| Symbols: ATRER1B, RER1B | endoplasmatic reticulum retrieval protein 1B | chr2:9243550-9244579 FORWARD LENGTH=195 |
| Medicago |
Medtr4g094930.1 |
124 |
90.8 |
95.4 |
| ATRER1A | HC | chr4:39306869-39304054 | 20130731 |
| Soybean |
Glyma01g39640.1 |
114 |
84.6 |
92.3 |
|
| LJGI |
gnl|LJGI|BP043461 |
398 |
100.0 |
100.0 |
similar to UniRef100_A7PLG2 Cluster: Chromosome chr7 scaffold_20, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_20, whole genome shotgun sequence - Vitis vinifera (Grape), partial (33%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2125960.1 |
length: 65 aa. |
| IPR004932 |
Retrieval of early ER protein Rer1 |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPanther |
PTHR10743 |
PROTEIN |
9.2e-36 |
1-63 |
| HMMPfam |
PF03248 |
Rer1 |
4.5e-25 |
1-51 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
4 |
26 |
- Wolf-PSORT
Lj1g3v2125960.1 chlo 9, vacu 2, nucl 1, cyto 1, extr 1, cyto_nucl 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2125960.1 |
|