| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | I3STW3_LOTJA | 687 | 96.6 | 96.6 | (tr|I3STW3) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep | AT2G34260.1 | 441 | 67.0 | 82.1 | | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:14465899-14468416 FORWARD LENGTH=353 |
| Medicago | Medtr4g111810.1 | 616 | 83.6 | 90.5 | | transducin/WD-40 repeat protein | HC | chr4:46200399-46208312 | 20130731 |
| Soybean | Glyma10g26240.3 | 603 | 82.8 | 89.3 | |
| LJGI | gnl|LJGI|TC58902 | 2066 | 99.8 | 99.8 | similar to UniRef100_A7QHL0 Cluster: Chromosome chr5 scaffold_98, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_98, whole genome shotgun sequence - Vitis vinifera (Grape), partial (90%) |
| Lj1g3v2124820.1 | length: 349 aa. | |||
| IPR001680 | WD40 repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0005515 | protein binding | ||
| HMMPfam | PF00400 | WD40 | 0.033 | 50-78 130-164 266-294 |
| HMMSmart | SM00320 | WD40 | 0.058 | 43-82 85-124 127-166 169-208 254-294 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | |||
| Molecular Function | GO:0005515 | protein binding | ||
| Gene3D | G3DSA:2.130.10.10 | no description | 1.4e-42 | 11-326 |
| IPR017986 | WD40-repeat-containing domain | |||
| Molecular Function | GO:0005515 | protein binding | ||
| ProfileScan | PS50294 | WD_REPEATS_REGION | 19.907 | 50-303 |
| superfamily | SSF50978 | WD40 | 4.4e-45 | 10-298 |
| IPR019775 | WD40 repeat, conserved site | |||
| PatternScan | PS00678 | WD_REPEATS_1 | NA | 281-295 |
| no_ID | ||||
| HMMPanther | PTHR22840 | FAMILY | 4.7e-123 | 1-344 |
| Seg | seg | seg | NA | 314-325 |
Lj1g3v2124820.1 cyto 7, nucl 3, cysk 2, extr 1, golg 1, cysk_plas 1
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj1g3v2124820.1 | Not targeted | -24.845 | 0 | -12.113 | 20.46% | -12.733 |