Miyakogusa Predicted Gene

Lj1g3v2110490.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SIC1_LOTJA 613 95.6 95.9 (tr|I3SIC1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT2G40290.1 547 84.3 91.7 | Symbols: | Eukaryotic translation initiation factor 2 subunit 1 | chr2:16829030-16830889 REVERSE LENGTH=344
Medicago Medtr3g071550.1 555 86.8 90.6 | eukaryotic translation initiation factor 2 alpha | HC | chr3:32110879-32105937 | 20130731
Soybean Glyma11g35600.1 589 90.8 94.0  
LJGI gnl|LJGI|TC73164 1903 100.0 100.0 similar to UniRef100_A7Q3N2 Cluster: Chromosome chr13 scaffold_48, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_48, whole genome shotgun sequence - Vitis vinifera (Grape), partial (97%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2110490.1 length: 320 aa.
IPR003029 Ribosomal protein S1, RNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00575 S1 1e-12 16-89
ProfileScan PS50126 S1 15.904 18-89
IPR011488 Translation initiation factor 2, alpha subunit
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003743 translation initiation factor activity    
Cellular Component GO:0005850 eukaryotic translation initiation factor 2 complex    
HMMPfam PF07541 EIF_2_alpha 2.4e-46 126-257
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 2.4e-38 7-93
superfamily SSF50249 Nucleic 4.4e-20 4-90
IPR022967 RNA-binding domain, S1
HMMSmart SM00316 Ribosomal 4.7e-11 16-89
IPR024054 Translation initiation factor 2, alpha subunit, middle domain
Gene3D G3DSA:1.10.150.190 no description 9.5e-37 94-196
superfamily SSF116742 eIF2alpha 7.9e-31 91-196
IPR024055 Translation initiation factor 2, alpha subunit, C-terminal
Gene3D G3DSA:3.30.70.1130 no description 1.8e-47 201-320
superfamily SSF110993 eIF-2-alpha, 7.3e-39 200-316
no_ID  
HMMPanther PTHR10602 EUKARYOTIC 3.8e-171 1-320
HMMPanther PTHR10602:SF0 EUKARYOTIC 3.8e-171 1-320
Seg seg seg NA 52-64
Wolf-PSORT
Lj1g3v2110490.1	cyto 10, cysk 2, plas 1, golg 1, cysk_nucl 1, golg_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2110490.1