Miyakogusa Predicted Gene
- Lj1g3v2096250.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KU37_SOYBN |
376 |
77.6 |
86.5 |
(tr|K7KU37) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G27590.1 |
248 |
54.1 |
68.8 |
| Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.1); Has 109 Blast hits to 109 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9592293-9593912 FORWARD LENGTH=264 |
| Medicago |
Medtr3g111090.1 |
382 |
75.8 |
85.7 |
| symplekin tight junction protein carboxy-terminal protein | HC | chr3:51920629-51901963 | 20130731 |
| Soybean |
Glyma06g09590.2 |
370 |
77.8 |
86.4 |
|
| LJGI |
gnl|LJGI|TC78923 |
188 |
100.0 |
100.0 |
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2096250.2 |
length: 273 aa. |
| IPR011989 |
Armadillo-like helical |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:1.25.10.10 |
no description |
1.6e-07 |
6-112 |
| IPR016024 |
Armadillo-type fold |
| Molecular Function |
GO:0005488 |
binding |
|
|
| superfamily |
SSF48371 |
ARM |
3e-07 |
3-106 |
| IPR021850 |
Protein of unknown function DUF3453 |
| HMMPfam |
PF11935 |
DUF3453 |
5.2e-34 |
94-244 |
| no_ID |
|
| HMMPanther |
PTHR15245 |
FAMILY |
4.3e-104 |
2-241 |
| HMMPanther |
PTHR15245:SF12 |
UNKNOWN |
4.3e-104 |
2-241 |
| Seg |
seg |
seg |
NA |
36-49 |
- Wolf-PSORT
Lj1g3v2096250.2 cyto 4, chlo 3, extr 3, nucl 1, mito 1, vacu 1, E.R. 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2096250.2 |
|