Miyakogusa Predicted Gene
- Lj1g3v2068760.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JUV6_SOYBN |
981 |
83.7 |
91.1 |
(tr|I1JUV6) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT4G32810.1 |
715 |
64.3 |
80.8 |
| Symbols: CCD8, MAX4, ATCCD8 | carotenoid cleavage dioxygenase 8 | chr4:15828348-15831299 FORWARD LENGTH=570 |
| Medicago |
Medtr3g109610.1 |
977 |
83.3 |
90.9 |
| carotenoid cleavage dioxygenase | HC | chr3:51268479-51271917 | 20130731 |
| Soybean |
Glyma04g08910.1 |
964 |
84.5 |
92.1 |
|
| LJGI |
gnl|LJGI|TC79835 |
870 |
100.0 |
100.0 |
similar to UniRef100_Q6Q623 Cluster: Dioxygenase RAMOSUS1; n=1; Pisum sativum|Rep: Dioxygenase RAMOSUS1 - Pisum sativum (Garden pea), partial (26%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2068760.1 |
length: 566 aa. |
| IPR004294 |
Carotenoid oxygenase |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR10543 |
BETA-CAROTENE |
1e-235 |
56-566 |
| HMMPfam |
PF03055 |
RPE65 |
2.4e-106 |
85-565 |
| no_ID |
|
| HMMPanther |
PTHR10543:SF6 |
BETA-CAROTENE |
1e-235 |
56-566 |
- Wolf-PSORT
Lj1g3v2068760.1 chlo 4, cyto 4, mito_plas 1.83333, mito 1.5, cysk_plas 1.33333, extr 1, vacu 1, E.R. 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2068760.1 |
|