Miyakogusa Predicted Gene
- Lj1g3v2067530.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KTX6_SOYBN |
979 |
80.3 |
89.1 |
(tr|K7KTX6) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G63520.1 |
219 |
30.1 |
47.9 |
| Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538 |
| Medicago |
Medtr3g110195.1 |
959 |
78.4 |
87.2 |
| retinal pigment epithelial membrane protein | HC | chr3:51201204-51196407 | 20130731 |
| Soybean |
Glyma04g08860.1 |
403 |
57.0 |
69.4 |
|
| LJGI |
gnl|LJGI|TC60597 |
1463 |
100.0 |
100.0 |
similar to UniRef100_A7P585 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2067530.1 |
length: 588 aa. |
| IPR004294 |
Carotenoid oxygenase |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR10543 |
BETA-CAROTENE |
1.4e-135 |
21-582 |
| HMMPfam |
PF03055 |
RPE65 |
1.1e-116 |
87-582 |
| no_ID |
|
| HMMPanther |
PTHR10543:SF1 |
9-CIS-EPOXYCAROTENOID |
1.4e-135 |
21-582 |
- Wolf-PSORT
Lj1g3v2067530.1 pero 7, cyto 2, mito 2, nucl 1, extr 1, E.R. 1, chlo_mito 1, cyto_mito 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2067530.1 |
|