| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | I1K995_SOYBN | 556 | 68.9 | 77.8 | (tr|I1K995) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep | AT4G32720.1 | 404 | 51.6 | 68.2 | | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313-15789683 FORWARD LENGTH=433 |
| Medicago | Medtr1g026890.1 | 471 | 56.3 | 68.0 | | RNA recognition motif protein | HC | chr1:8835899-8830191 | 20130731 |
| Soybean | Glyma06g08650.1 | 556 | 68.9 | 77.8 | |
| LJGI | gnl|LJGI|TC57686 | 2692 | 99.9 | 99.9 | similar to UniRef100_A7P5B6 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (72%) |
| Lj1g3v2050880.1 | length: 452 aa. | |||
| IPR000504 | RNA recognition motif domain | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| HMMSmart | SM00360 | RNA | 2.6 | 118-190 321-380 |
| ProfileScan | PS50102 | RRM | 10.104 | 117-202 |
| IPR002344 | Lupus La protein | |||
| Molecular Function | GO:0003723 | RNA binding | ||
| Cellular Component | GO:0005634 | nucleus | ||
| Biological Process | GO:0006396 | RNA processing | ||
| Cellular Component | GO:0030529 | ribonucleoprotein complex | ||
| FPrintScan | PR00302 | LUPUSLA | 3e-10 | 18-35 44-59 158-176 |
| IPR006630 | RNA-binding protein Lupus La | |||
| HMMPfam | PF05383 | La | 4.8e-21 | 15-86 |
| HMMSmart | SM00715 | Domain | 3.3e-36 | 9-101 |
| ProfileScan | PS50961 | HTH_LA | 24.068 | 5-108 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | |||
| Gene3D | G3DSA:1.10.10.10 | no description | 7.1e-29 | 6-104 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | |||
| Molecular Function | GO:0000166 | nucleotide binding | ||
| Gene3D | G3DSA:3.30.70.330 | no description | 1.6e-26 | 114-195 299-416 |
| IPR014886 | RNA-binding motif | |||
| HMMPfam | PF08777 | RRM_3 | 2.6e-22 | 320-413 |
| no_ID | ||||
| HMMPanther | PTHR22792 | LUPUS | 1.3e-154 | 7-446 |
| HMMPanther | PTHR22792:SF4 | RNA-BINDING | 1.3e-154 | 7-446 |
| HMMPfam | PF14259 | RRM_6 | 2.5e-08 | 127-178 |
| Seg | seg | seg | NA | 169-181 277-299 416-433 |
| superfamily | SSF46785 | "Winged | 3.4e-24 | 2-105 |
| superfamily | SSF54928 | RNA-binding | 1e-10 | 115-393 |
Lj1g3v2050880.1 nucl 8, cyto 4, cysk_nucl 4
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj1g3v2050880.1 |