Miyakogusa Predicted Gene

Lj1g3v2038800.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K996_SOYBN 337 72.9 83.1 (tr|I1K996) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G32720.1 274 59.2 76.2 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313-15789683 FORWARD LENGTH=433
Medicago Medtr1g026890.1 330 73.4 85.6 | RNA recognition motif protein | HC | chr1:8835899-8830191 | 20130731
Soybean Glyma06g08650.2 337 72.9 83.1  
LJGI gnl|LJGI|TC57686 1342 100.0 100.0 similar to UniRef100_A7P5B6 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (72%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2038800.1 length: 225 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00360 RNA 0.00081 118-190
ProfileScan PS50102 RRM 10.104 117-202
IPR002344 Lupus La protein
Molecular Function GO:0003723 RNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006396 RNA processing    
Cellular Component GO:0030529 ribonucleoprotein complex    
FPrintScan PR00302 LUPUSLA 5.4e-11 18-35
44-59
158-176
IPR006630 RNA-binding protein Lupus La
HMMPfam PF05383 La 1.4e-21 15-86
HMMSmart SM00715 Domain 3.3e-36 9-101
ProfileScan PS50961 HTH_LA 24.068 5-108
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 1.7e-29 6-104
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.1e-08 114-195
no_ID  
HMMPanther PTHR22792 LUPUS 3.5e-104 7-225
HMMPanther PTHR22792:SF4 RNA-BINDING 3.5e-104 7-225
HMMPfam PF14259 RRM_6 8.1e-09 127-178
Seg seg seg NA 169-181
superfamily SSF46785 "Winged 3.4e-24 2-105
superfamily SSF54928 RNA-binding 1.4e-10 106-204
Wolf-PSORT
Lj1g3v2038800.1	nucl 5, pero 4, mito 2, chlo 1, cyto 1, plas 1, cyto_mito 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2038800.1