Miyakogusa Predicted Gene

Lj1g3v2036590.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL F6H2Y4_VITVI 158 77.7 91.5 (tr|F6H2Y4) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03800 PE=2 SV=1
TAIR_pep AT4G32720.1 136 64.9 87.2 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313-15789683 FORWARD LENGTH=433
Medicago Medtr1g026890.1 147 77.7 87.2 | RNA recognition motif protein | HC | chr1:8835899-8830191 | 20130731
Soybean Glyma06g08650.2 151 75.5 89.4  
LJGI gnl|LJGI|TC57686 561 100.0 100.0 similar to UniRef100_A7P5B6 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (72%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2036590.1 length: 98 aa.
IPR006630 RNA-binding protein Lupus La
method AccNumber shortName E-value location
HMMPfam PF05383 La 1.4e-07 2-53
HMMSmart SM00715 Domain 1.4e-07 2-68
ProfileScan PS50961 HTH_LA 13.958 1-75
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 3e-13 1-71
no_ID  
HMMPanther PTHR22792 LUPUS 7.5e-34 1-94
HMMPanther PTHR22792:SF4 RNA-BINDING 7.5e-34 1-94
superfamily SSF46785 "Winged 2.7e-09 1-72
Wolf-PSORT
Lj1g3v2036590.1	cyto 8, nucl 3, chlo 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2036590.1 Not targeted -32.318 -0.152 -2.246 35.57% -29.919