Miyakogusa Predicted Gene
- Lj1g3v1991510.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1K951_SOYBN |
434 |
87.7 |
91.4 |
(tr|I1K951) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT4G30360.1 |
374 |
75.7 |
84.8 |
| Symbols: ATCNGC17, CNGC17 | cyclic nucleotide-gated channel 17 | chr4:14855060-14857779 REVERSE LENGTH=720 |
| Medicago |
Medtr3g109030.1 |
427 |
85.0 |
90.7 |
| cyclic nucleotide-gated ion channel-like protein | HC | chr3:50396507-50400895 | 20130731 |
| Soybean |
Glyma06g08170.1 |
435 |
87.7 |
91.4 |
|
| LJGI |
gnl|LJGI|TC65850 |
1066 |
99.8 |
99.8 |
homologue to UniRef100_A7QJQ9 Cluster: Chromosome undetermined scaffold_107, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_107, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v1991510.1 |
length: 263 aa. |
| IPR000595 |
Cyclic nucleotide-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF00027 |
cNMP_binding |
2.7e-11 |
51-144 |
| HMMSmart |
SM00100 |
Cyclic |
1.2e-13 |
28-159 |
| ProfileScan |
PS50042 |
CNMP_BINDING_3 |
11.864 |
28-111 |
| IPR014710 |
RmlC-like jelly roll fold |
| Gene3D |
G3DSA:2.60.120.10 |
no description |
1.8e-24 |
26-144 |
| IPR018488 |
Cyclic nucleotide-binding, conserved site |
| PatternScan |
PS00888 |
CNMP_BINDING_1 |
NA |
55-71 |
| IPR018490 |
Cyclic nucleotide-binding-like |
| superfamily |
SSF51206 |
cAMP-binding |
1.5e-21 |
17-152 |
| no_ID |
|
| HMMPanther |
PTHR10217 |
VOLTAGE |
8.3e-103 |
19-259 |
| HMMPanther |
PTHR10217:SF7 |
CYCLIC |
8.3e-103 |
19-259 |
- Wolf-PSORT
Lj1g3v1991510.1 chlo 7, nucl 2, mito 2, cyto 1, extr 1, E.R. 1, cyto_mito 1, cysk_nucl 1, nucl_plas 1, mito_plas 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v1991510.1 |
|