Miyakogusa Predicted Gene
- Lj1g3v1955040.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SNC3_LOTJA |
363 |
92.4 |
92.4 |
(tr|I3SNC3) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT4G31130.1 |
267 |
73.3 |
86.6 |
| Symbols: | Protein of unknown function (DUF1218) | chr4:15137159-15138465 REVERSE LENGTH=195 |
| Medicago |
Medtr3g108630.1 |
281 |
79.1 |
89.0 |
| transmembrane protein, putative | HC | chr3:50158969-50161016 | 20130731 |
| Soybean |
Glyma06g07900.1 |
270 |
75.7 |
86.1 |
|
| LJGI |
gnl|LJGI|TC58039 |
1183 |
100.0 |
100.0 |
similar to UniRef100_A7P544 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (70%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v1955040.1 |
length: 197 aa. |
| IPR009606 |
Protein of unknown function DUF1218 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF06749 |
DUF1218 |
1.5e-13 |
60-157 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
174-188 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
4 |
26 |
| 52 |
73 |
| 96 |
118 |
| 144 |
166 |
- Wolf-PSORT
Lj1g3v1955040.1 extr 4, plas 3, vacu 3, chlo 1, cyto 1, E.R. 1, golg 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v1955040.1 |
|