Miyakogusa Predicted Gene

Lj1g3v1943860.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7JCA6_MEDTR 270 77.1 83.3 (tr|G7JCA6) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_3g108410 PE=4 SV=1

TAIR_pep AT5G25580.1 177 49.0 67.2 | Symbols: | BEST Arabidopsis thaliana protein match is: DDT domain superfamily (TAIR:AT1G18950.1); Has 178 Blast hits to 178 proteins in 75 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 33; Plants - 60; Viruses - 1; Other Eukaryotes - 29 (source: NCBI BLink). | chr5:8903550-8906108 FORWARD LENGTH=405

Medicago Medtr3g108410.1 270 77.1 83.3 | hypothetical protein | HC | chr3:50101068-50105833 | 20130731

Soybean Glyma04g07780.1 261 76.3 83.2

LJGI gnl|LJGI|FS320602 557 100.0 100.0 similar to UniRef100_A7P5I9 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (36%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v1943860.2 length: 192 aa.

no_ID

method AccNumber shortName E-value location

HMMPanther PTHR31411 FAMILY 6.7e-44 1-192

Wolf-PSORT

Lj1g3v1943860.2 nucl 12, cyto 1, mito 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1943860.2 Not targeted -37.171 -15.289 -0.471 46.75% -21.411

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7JCA6_MEDTR	270	77.1	83.3	(tr\|G7JCA6) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_3g108410 PE=4 SV=1
TAIR_pep	AT5G25580.1	177	49.0	67.2	\| Symbols: \| BEST Arabidopsis thaliana protein match is: DDT domain superfamily (TAIR:AT1G18950.1); Has 178 Blast hits to 178 proteins in 75 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 33; Plants - 60; Viruses - 1; Other Eukaryotes - 29 (source: NCBI BLink). \| chr5:8903550-8906108 FORWARD LENGTH=405
Medicago	Medtr3g108410.1	270	77.1	83.3	\| hypothetical protein \| HC \| chr3:50101068-50105833 \| 20130731
Soybean	Glyma04g07780.1	261	76.3	83.2
LJGI	gnl\|LJGI\|FS320602	557	100.0	100.0	similar to UniRef100_A7P5I9 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (36%)

no_ID
Lj1g3v1943860.2				length: 192 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR31411	FAMILY	6.7e-44	1-192