Miyakogusa Predicted Gene

Lj1g3v1932790.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JC98_MEDTR 964 75.8 84.3 (tr|G7JC98) Potassium channel OS=Medicago truncatula GN=MTR_3g108320 PE=4 SV=1
TAIR_pep AT4G32650.1 682 54.5 70.2 | Symbols: ATKC1, KAT3, KC1, AtLKT1 | potassium channel in Arabidopsis thaliana 3 | chr4:15751482-15754797 REVERSE LENGTH=662
Medicago Medtr3g108320.1 964 75.8 84.3 | potassium channel KAT3 protein | HC | chr3:50049464-50042439 | 20130731
Soybean Glyma04g07750.1 678 68.1 76.2  
LJGI gnl|LJGI|TC67214 1786 100.0 100.0 weakly similar to UniRef100_A7P5I7 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1932790.1 length: 623 aa.
IPR000595 Cyclic nucleotide-binding domain
method AccNumber shortName E-value location
HMMPfam PF00027 cNMP_binding 5.6e-13 393-476
HMMSmart SM00100 Cyclic 1.1e-22 372-489
ProfileScan PS50042 CNMP_BINDING_3 23.290 372-491
IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG
Molecular Function GO:0005249 voltage-gated potassium channel activity    
Biological Process GO:0006813 potassium ion transport    
Cellular Component GO:0016020 membrane    
FPrintScan PR01463 EAGCHANLFMLY 2.9e-11 88-98
99-108
242-259
268-279
286-295
IPR005821 Ion transport domain
Molecular Function GO:0005216 ion channel activity    
Biological Process GO:0006811 ion transport    
Cellular Component GO:0016020 membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00520 Ion_trans 8e-18 86-290
IPR014710 RmlC-like jelly roll fold
Gene3D G3DSA:2.60.120.10 no description 1.5e-22 361-485
IPR018490 Cyclic nucleotide-binding-like
superfamily SSF51206 cAMP-binding 2.8e-41 298-494
IPR021789 Potassium channel, plant-type
HMMPfam PF11834 DUF3354 3.8e-19 552-623
ProfileScan PS51490 KHA 26.001 554-623
no_ID  
Gene3D G3DSA:1.10.287.630 no description 0.00087 305-360
Gene3D G3DSA:1.10.287.70 no description 2e-43 53-294
HMMPanther PTHR10217 VOLTAGE 3.2e-122 35-481
HMMPanther PTHR10217:SF7 CYCLIC 3.2e-122 35-481
Seg seg seg NA 79-101
162-172
superfamily SSF81324 Voltage-gated 3.4e-41 46-319
Putative transmembrane regions
  From To
TM segments
SOSUI		 55 77
84 106
194 215
271 293
Wolf-PSORT
Lj1g3v1932790.1	plas 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1932790.1