Miyakogusa Predicted Gene

Lj1g3v1931370.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K905_SOYBN 1464 67.3 75.4 (tr|I1K905) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G11430.1 459 36.8 50.5 | Symbols: | SPOC domain / Transcription elongation factor S-II protein | chr5:3648469-3652256 FORWARD LENGTH=873
Medicago Medtr3g108010.1 1410 65.5 74.9 | SPOC domain/transcription elongation factor S-II, putative | HC | chr3:49909087-49915326 | 20130731
Soybean Glyma06g07700.1 1314 62.7 69.8  
LJGI gnl|LJGI|TC70308 1556 100.0 100.0 similar to UniRef100_A7P5H0 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1931370.1 length: 1144 aa.
IPR003618 Transcription elongation factor S-II, central domain
method AccNumber shortName E-value location
Biological Process GO:0006351 transcription, DNA-dependent    
Gene3D G3DSA:1.10.472.30 no description 3.2e-37 401-475
HMMPfam PF07500 TFIIS_M 9.2e-29 403-487
ProfileScan PS51321 TFIIS_CENTRAL 29.840 376-499
superfamily SSF46942 Elongation 2.9e-23 408-475
IPR012921 Spen paralogue and orthologue SPOC, C-terminal
HMMPfam PF07744 SPOC 3.5e-10 753-858
IPR017890 Transcription elongation factor S-IIM
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00510 Domain 6.2e-30 388-482
no_ID  
HMMPanther PTHR11477 TRANSCRIPTION 4.1e-86 408-1002
Seg seg seg NA 66-78
217-223
635-650
944-964
Wolf-PSORT
Lj1g3v1931370.1	nucl 13.5, cyto_nucl 7.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1931370.1