Miyakogusa Predicted Gene

Lj1g3v1929090.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JUH3_SOYBN 885 76.8 80.6 (tr|I1JUH3) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT4G32551.1 734 64.8 74.6 | Symbols: LUG, RON2 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | chr4:15707863-15713359 FORWARD LENGTH=931
Medicago Medtr3g107910.2 881 76.4 79.6 | transcriptional corepressor leunig-like protein | HC | chr3:49795618-49803676 | 20130731
Soybean Glyma04g07460.1 893 78.0 81.8  
LJGI gnl|LJGI|TC58302 1691 99.4 99.4 similar to UniRef100_A7P5M4 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1929090.3 length: 572 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0016 291-321
327-364
371-408
453-488
539-572
HMMSmart SM00320 WD40 12 283-322
325-364
368-408
450-488
494-533
535-571
ProfileScan PS50082 WD_REPEATS_2 9.071 290-331
332-367
375-417
457-489
542-572
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.5e-66 266-572
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 36.121 290-572
superfamily SSF50978 WD40 1.8e-61 242-572
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 351-365
no_ID  
HMMPanther PTHR22847 WD40 1.4e-109 87-572
HMMPanther PTHR22847:SF131PUTATIVE UNCHARACTERIZED 1.4e-109 87-572
Seg seg seg NA 15-28
92-122
137-141
179-203
Wolf-PSORT
Lj1g3v1929090.3	nucl 9, plas 1.5, golg_plas 1.5, chlo 1, mito 1, cysk 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1929090.3