Miyakogusa Predicted Gene

Lj1g3v1914950.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SBH0_LOTJA 201 79.9 79.9 (tr|I3SBH0) Histone H2A OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G52740.1 187 73.1 76.9 | Symbols: HTA9 | histone H2A protein 9 | chr1:19645409-19646221 FORWARD LENGTH=134
Medicago Medtr1g011850.1 196 76.9 76.9 | core histone H2A/H2B/H3/H4 | HC | chr1:2226797-2223509 | 20130731
Soybean Glyma04g20610.1 197 77.6 78.4  
LJGI gnl|LJGI|TC74241 809 100.0 100.0 homologue to UniRef100_A7P5K0 Cluster: Histone H2A; n=1; Vitis vinifera|Rep: Histone H2A - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1914950.1 length: 134 aa.
IPR002119 Histone H2A
method AccNumber shortName E-value location
Cellular Component GO:0000786 nucleosome    
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006334 nucleosome assembly    
FPrintScan PR00620 HISTONEH2A 2.4e-43 25-47
55-70
70-83
84-98
111-129
HMMSmart SM00414 Histone 1.3e-70 15-134
PatternScan PS00046 HISTONE_H2A NA 33-39
IPR007125 Histone core
Molecular Function GO:0003677 DNA binding    
HMMPfam PF00125 Histone 1.1e-21 29-103
IPR009072 Histone-fold
Molecular Function GO:0046982 protein heterodimerization activity    
Gene3D G3DSA:1.10.20.10 no description 1.8e-51 19-133
superfamily SSF47113 Histone-fold 3.2e-41 3-111
no_ID  
HMMPanther PTHR23430 HISTONE 4e-76 21-130
Seg seg seg NA 16-33
58-66
Wolf-PSORT
Lj1g3v1914950.1	nucl 8, cyto 3, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1914950.1