Miyakogusa Predicted Gene
- Lj1g3v1911730.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KTI9_SOYBN |
2100 |
84.1 |
91.0 |
(tr|K7KTI9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G49500.1 |
1663 |
67.1 |
80.1 |
| Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196 |
| Medicago |
Medtr3g107390.2 |
2049 |
81.1 |
89.9 |
| RNA-dependent RNA polymerase family protein | HC | chr3:49541314-49536090 | 20130731 |
| Soybean |
Glyma06g07250.1 |
1889 |
85.1 |
91.5 |
|
| LJGI |
gnl|LJGI|TC70548 |
837 |
100.0 |
100.0 |
weakly similar to UniRef100_A7P5T3 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v1911730.1 |
length: 1201 aa. |
| IPR000504 |
RNA recognition motif domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| ProfileScan |
PS50102 |
RRM |
8.655 |
13-115 |
| IPR007855 |
RNA-dependent RNA polymerase, eukaryotic-type |
| Molecular Function |
GO:0003968 |
RNA-directed RNA polymerase activity |
|
|
| HMMPanther |
PTHR23079 |
RNA-DEPENDENT |
1.9e-222 |
229-1183 |
| HMMPfam |
PF05183 |
RdRP |
4.2e-180 |
421-1005 |
- Wolf-PSORT
Lj1g3v1911730.1 nucl 8, chlo 2, cyto 2, plas 1, cysk 1, chlo_mito 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v1911730.1 |
|