Miyakogusa Predicted Gene
- Lj1g3v1852290.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JAE3_MEDTR |
229 |
71.8 |
80.4 |
(tr|G7JAE3) Neurochondrin OS=Medicago truncatula GN=MTR_3g106410 PE=4 SV=1 |
| TAIR_pep |
AT4G32050.1 |
194 |
60.2 |
74.5 |
| Symbols: | neurochondrin family protein | chr4:15496620-15500717 FORWARD LENGTH=618 |
| Medicago |
Medtr3g106410.2 |
231 |
71.8 |
80.4 |
| neurochondrin protein | HC | chr3:49176740-49182193 | 20130731 |
| Soybean |
Glyma02g29250.1 |
210 |
70.4 |
81.6 |
|
| LJGI |
gnl|LJGI|TC63768 |
858 |
97.1 |
97.1 |
weakly similar to UniRef100_A7P602 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v1852290.2 |
length: 163 aa. |
| IPR008709 |
Neurochondrin |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR13109 |
NEUROCHONDRIN |
9e-64 |
3-158 |
| no_ID |
|
| HMMPanther |
PTHR13109:SF1 |
NEUROCHONDRIN-RELATED |
9e-64 |
3-158 |
| HMMPfam |
PF05536 |
Neurochondrin |
2.1e-47 |
6-160 |
| Seg |
seg |
seg |
NA |
62-75 |
- Wolf-PSORT
Lj1g3v1852290.2 chlo 8, nucl 1, cyto 1, plas 1, extr 1, vacu 1, pero 1, cyto_nucl 1, nucl_plas 1, cyto_pero 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v1852290.2 |
|