Miyakogusa Predicted Gene

Lj1g3v1820910.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KIG0_SOYBN 2358 81.3 86.6 (tr|K7KIG0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G25170.1 1761 65.6 76.7 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384
Medicago Medtr3g106210.3 2301 80.7 85.2 | CHD3-type chromatin-remodeling factor pickle protein | HC | chr3:49033778-49052884 | 20130731
Soybean Glyma06g06720.1 2343 81.4 86.4  
LJGI gnl|LJGI|GO011452 1078 98.6 98.6 similar to UniRef100_A7P5Y1 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1820910.2 length: 1425 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 1.4e-76 289-585
IPR000953 Chromo domain/shadow
HMMSmart SM00298 Chromatin 1.9e-14 98-167
189-244
ProfileScan PS50013 CHROMO_2 11.345 99-181
191-251
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 7.3e-13 645-722
HMMSmart SM00490 helicase 1.9e-22 638-722
ProfileScan PS51194 HELICASE_CTER 19.014 612-773
IPR001965 Zinc finger, PHD-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 PHD 6.4e-11 52-95
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
superfamily SSF46689 Homeodomain-like 0.0012 967-1018
IPR009462 Domain of unknown function DUF1086
HMMPfam PF06461 DUF1086 2e-46 936-1068
IPR009463 Domain of unknown function DUF1087
HMMPfam PF06465 DUF1087 1.3e-15 846-904
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 2.4e-11 16-95
IPR012957 CHD, C-terminal 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08074 CHDCT2 3.4e-05 1080-1114
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 7.2e-12 44-96
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.1e-32 282-495
ProfileScan PS51192 HELICASE_ATP_BIND_1 23.166 298-484
IPR016197 Chromo domain-like
superfamily SSF54160 Chromo 2.1e-17 65-177
168-244
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 53-94
IPR019787 Zinc finger, PHD-finger
Molecular Function GO:0005515 protein binding    
HMMPfam PF00628 PHD 7.5e-08 53-95
ProfileScan PS50016 ZF_PHD_2 9.757 50-97
IPR023780 Chromo domain
HMMPfam PF00385 Chromo 2.1e-14 124-158
192-241
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.4e-68 233-519
521-858
no_ID  
Coil coil coiled-coil NA 838-859
Gene3D G3DSA:2.40.50.40 no description 1.6e-14 100-174
188-246
Gene3D G3DSA:3.40.50.300 no description 1.3e-26 282-481
603-756
HMMPanther PTHR10799 SWI/SNF-RELATED 0 1-1205
HMMPanther PTHR10799:SF270SUBFAMILY NOT 0 1-1205
Seg seg seg NA 241-256
383-392
739-750
798-809
813-823
840-848
1040-1051
Wolf-PSORT
Lj1g3v1820910.2	cyto 9, nucl 3, chlo 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1820910.2