Miyakogusa Predicted Gene

Lj1g3v1819810.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KTE7_SOYBN 308 66.5 76.7 (tr|K7KTE7) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G31880.2 109 43.4 60.5 | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). | chr4:15419435-15423939 REVERSE LENGTH=872

Medicago Medtr3g106100.1 215 49.0 62.4 | nucleic acid-binding protein, putative | HC | chr3:48971316-48964581 | 20130731

Soybean Glyma04g06570.2 306 69.4 76.9

LJGI gnl|LJGI|DC598756 1068 99.8 99.8 similar to UniRef100_Q5FIA1 Cluster: Transcriptional regulator; n=1; Lactobacillus acidophilus|Rep: Transcriptional regulator - Lactobacillus acidophilus, partial (5%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v1819810.2 length: 510 aa.

IPR002999 Tudor domain

method AccNumber shortName E-value location

HMMSmart SM00333 Tudor 0.0084 176-231

no_ID

HMMPanther PTHR12663 ANDROGEN 8.1e-12 155-259

Seg seg seg NA 258-309
324-340
384-402
426-445
448-460
472-485

superfamily SSF63748 Tudor/PWWP/MBT 1.8e-09 177-218

Wolf-PSORT

Lj1g3v1819810.2 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1819810.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KTE7_SOYBN	308	66.5	76.7	(tr\|K7KTE7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G31880.2	109	43.4	60.5	\| Symbols: \| LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). \| chr4:15419435-15423939 REVERSE LENGTH=872
Medicago	Medtr3g106100.1	215	49.0	62.4	\| nucleic acid-binding protein, putative \| HC \| chr3:48971316-48964581 \| 20130731
Soybean	Glyma04g06570.2	306	69.4	76.9
LJGI	gnl\|LJGI\|DC598756	1068	99.8	99.8	similar to UniRef100_Q5FIA1 Cluster: Transcriptional regulator; n=1; Lactobacillus acidophilus\|Rep: Transcriptional regulator - Lactobacillus acidophilus, partial (5%)

IPR002999	Tudor domain
Lj1g3v1819810.2				length: 510 aa.
method	AccNumber	shortName	E-value	location
HMMSmart	SM00333	Tudor	0.0084	176-231
no_ID
HMMPanther	PTHR12663	ANDROGEN	8.1e-12	155-259
Seg	seg	seg	NA	258-309 324-340 384-402 426-445 448-460 472-485
superfamily	SSF63748	Tudor/PWWP/MBT	1.8e-09	177-218