Miyakogusa Predicted Gene

Lj1g3v1816550.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JU70_SOYBN 1224 87.7 92.7 (tr|I1JU70) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G25150.1 1005 71.2 83.3 | Symbols: TAF5 | TBP-associated factor 5 | chr5:8677117-8682058 FORWARD LENGTH=669
Medicago Medtr3g106080.1 1236 88.2 93.1 | TBP-associated factor 5 | HC | chr3:48932864-48942802 | 20130731
Soybean Glyma04g06540.1 1224 87.7 92.7  
LJGI gnl|LJGI|TC67781 1731 99.6 99.6 similar to UniRef100_A7P5W9 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (43%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1816550.1 length: 665 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 5.1e-12 344-374
409-443
453-485
490-527
531-569
573-611
HMMSmart SM00320 WD40 2.6e-11 335-374
404-443
446-485
488-527
530-569
572-611
ProfileScan PS50082 WD_REPEATS_2 17.493 342-375
411-443
453-494
495-536
537-578
579-620
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
ProfileScan PS50896 LISH 8.357 2-34
IPR007582 TFIID subunit, WD40-associated region
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF04494 TFIID_90kDa 1.5e-46 49-185
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 5.2e-82 339-621
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 61.061 411-620
superfamily SSF50978 WD40 6.6e-75 334-661
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 361-375
514-528
556-570
598-612
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 3.4e-09 430-444
514-528
598-612
no_ID  
HMMPanther PTHR19879 TRANSCRIPTION 3.1e-220 4-660
HMMPanther PTHR19879:SF0 SUBFAMILY 3.1e-220 4-660
Seg seg seg NA 266-283
Wolf-PSORT
Lj1g3v1816550.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1816550.1