database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | I1JU70_SOYBN | 1224 | 87.7 | 92.7 | (tr|I1JU70) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
TAIR_pep | AT5G25150.1 | 1005 | 71.2 | 83.3 | | Symbols: TAF5 | TBP-associated factor 5 | chr5:8677117-8682058 FORWARD LENGTH=669 |
Medicago | Medtr3g106080.1 | 1236 | 88.2 | 93.1 | | TBP-associated factor 5 | HC | chr3:48932864-48942802 | 20130731 |
Soybean | Glyma04g06540.1 | 1224 | 87.7 | 92.7 | |
LJGI | gnl|LJGI|TC67781 | 1731 | 99.6 | 99.6 | similar to UniRef100_A7P5W9 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (43%) |
Lj1g3v1816550.1 | length: 665 aa. | |||
IPR001680 | WD40 repeat | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
Molecular Function | GO:0005515 | protein binding | ||
HMMPfam | PF00400 | WD40 | 5.1e-12 | 344-374 409-443 453-485 490-527 531-569 573-611 |
HMMSmart | SM00320 | WD40 | 2.6e-11 | 335-374 404-443 446-485 488-527 530-569 572-611 |
ProfileScan | PS50082 | WD_REPEATS_2 | 17.493 | 342-375 411-443 453-494 495-536 537-578 579-620 |
IPR006594 | LisH dimerisation motif | |||
Molecular Function | GO:0005515 | protein binding | ||
ProfileScan | PS50896 | LISH | 8.357 | 2-34 |
IPR007582 | TFIID subunit, WD40-associated region | |||
Cellular Component | GO:0005634 | nucleus | ||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
HMMPfam | PF04494 | TFIID_90kDa | 1.5e-46 | 49-185 |
IPR015943 | WD40/YVTN repeat-like-containing domain | |||
Molecular Function | GO:0005515 | protein binding | ||
Gene3D | G3DSA:2.130.10.10 | no description | 5.2e-82 | 339-621 |
IPR017986 | WD40-repeat-containing domain | |||
Molecular Function | GO:0005515 | protein binding | ||
ProfileScan | PS50294 | WD_REPEATS_REGION | 61.061 | 411-620 |
superfamily | SSF50978 | WD40 | 6.6e-75 | 334-661 |
IPR019775 | WD40 repeat, conserved site | |||
PatternScan | PS00678 | WD_REPEATS_1 | NA | 361-375 514-528 556-570 598-612 |
IPR020472 | G-protein beta WD-40 repeat | |||
FPrintScan | PR00320 | GPROTEINBRPT | 3.4e-09 | 430-444 514-528 598-612 |
no_ID | ||||
HMMPanther | PTHR19879 | TRANSCRIPTION | 3.1e-220 | 4-660 |
HMMPanther | PTHR19879:SF0 | SUBFAMILY | 3.1e-220 | 4-660 |
Seg | seg | seg | NA | 266-283 |
Lj1g3v1816550.1 nucl 13
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
Lj1g3v1816550.1 |