Miyakogusa Predicted Gene

Lj1g3v1815490.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KIE2_SOYBN 891 70.0 81.6 (tr|K7KIE2) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
TAIR_pep AT3G23780.2 676 57.5 74.0 | Symbols: NRPD2A | nuclear RNA polymerase D2A | chr3:8567971-8573819 REVERSE LENGTH=1172
Medicago Medtr3g105990.1 892 71.3 80.9 | DNA-directed RNA polymerase subunit beta | HC | chr3:48883860-48876376 | 20130731
Soybean Glyma06g06480.1 815 73.6 84.4  
LJGI gnl|LJGI|TC75885 1221 99.7 99.7 similar to UniRef100_A7P644 Cluster: DNA-directed RNA polymerase; n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase - Vitis vinifera (Grape), partial (17%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1815490.1 length: 593 aa.
IPR007642 RNA polymerase Rpb2, domain 2
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Gene3D G3DSA:3.90.1110.10 no description 1.6e-29 266-412
HMMPfam PF04561 RNA_pol_Rpb2_2 1.1e-13 294-421
IPR007644 RNA polymerase, beta subunit, protrusion
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04563 RNA_pol_Rpb2_1 7.2e-33 69-481
IPR007645 RNA polymerase Rpb2, domain 3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04565 RNA_pol_Rpb2_3 1.3e-13 502-559
IPR015712 DNA-directed RNA polymerase, subunit 2
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0032549 ribonucleoside binding    
HMMPanther PTHR20856 DNA-DIRECTED 5.9e-265 11-588
no_ID  
Gene3D G3DSA:3.90.1100.10 no description 2e-56 413-568
HMMPanther PTHR20856:SF6 DNA-DIRECTED 5.9e-265 11-588
Seg seg seg NA 16-37
185-199
423-433
superfamily SSF64484 beta 2e-97 45-592
Putative transmembrane regions
  From To
TM segments
SOSUI		 289 311
Wolf-PSORT
Lj1g3v1815490.1	cyto 7, E.R. 3, nucl 1, mito 1, pero 1, cysk 1, cysk_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1815490.1