Miyakogusa Predicted Gene

Lj1g3v1811180.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KIC8_SOYBN 1002 77.5 85.9 (tr|K7KIC8) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G24960.2 690 52.3 69.7 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:10617263-10620034 FORWARD LENGTH=774

Medicago Medtr3g045460.2 307 31.3 49.8 | Myb/SANT-like DNA-binding domain protein | HC | chr3:14798812-14790314 | 20130731

Soybean Glyma04g06350.1 614 65.2 74.2

LJGI --No_Hits--

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v1811180.1 length: 615 aa.

IPR024752 Myb/SANT-like domain

method AccNumber shortName E-value location

HMMPfam PF12776 Myb_DNA-bind_3 2.2e-19 15-109
181-274
344-437
508-602

no_ID

Coil coil coiled-coil NA 392-413

Wolf-PSORT

Lj1g3v1811180.1 nucl 7, cyto 6

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1811180.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KIC8_SOYBN	1002	77.5	85.9	(tr\|K7KIC8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G24960.2	690	52.3	69.7	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr2:10617263-10620034 FORWARD LENGTH=774
Medicago	Medtr3g045460.2	307	31.3	49.8	\| Myb/SANT-like DNA-binding domain protein \| HC \| chr3:14798812-14790314 \| 20130731
Soybean	Glyma04g06350.1	614	65.2	74.2
LJGI	--No_Hits--

IPR024752	Myb/SANT-like domain
Lj1g3v1811180.1				length: 615 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF12776	Myb_DNA-bind_3	2.2e-19	15-109 181-274 344-437 508-602
no_ID
Coil	coil	coiled-coil	NA	392-413