Miyakogusa Predicted Gene
- Lj1g3v1798720.3
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7J966_MEDTR |
138 |
57.9 |
75.4 |
(tr|G7J966) Glutamate receptor 2.8 OS=Medicago truncatula GN=MTR_3g105610 PE=4 SV=1 |
| TAIR_pep |
AT2G29120.1 |
110 |
49.1 |
67.5 |
| Symbols: ATGLR2.7, GLR2.7 | glutamate receptor 2.7 | chr2:12511479-12515893 REVERSE LENGTH=952 |
| Medicago |
Medtr3g105610.1 |
138 |
57.9 |
75.4 |
| glutamate receptor 3.2 | LC | chr3:48715609-48710293 | 20130731 |
| Soybean |
Glyma07g35300.1 |
87.0 |
47.8 |
63.3 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v1798720.3 |
length: 124 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
1.2e-05 |
40-115 |
| HMMPanther |
PTHR18966 |
IONOTROPIC |
3.5e-38 |
4-124 |
| HMMPanther |
PTHR18966:SF6 |
GLUTAMATE |
3.5e-38 |
4-124 |
| HMMPfam |
PF13458 |
Peripla_BP_6 |
2.1e-07 |
40-119 |
| superfamily |
SSF53822 |
Periplasmic |
1.3e-11 |
38-123 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
11 |
33 |
- Wolf-PSORT
Lj1g3v1798720.3 chlo 4, E.R. 3, cyto 2, chlo_mito 2, E.R._vacu 2, E.R._plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v1798720.3 |
|