Miyakogusa Predicted Gene
- Lj1g3v1798560.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KS42_SOYBN |
645 |
73.0 |
83.9 |
(tr|I1KS42) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G21970.1 |
538 |
66.5 |
81.2 |
| Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:7262071-7263420 FORWARD LENGTH=449 |
| Medicago |
Medtr3g105530.1 |
635 |
73.9 |
85.7 |
| plant organelle RNA recognition domain protein | HC | chr3:48661486-48663294 | 20130731 |
| Soybean |
Glyma08g11190.1 |
645 |
73.0 |
83.9 |
|
| LJGI |
gnl|LJGI|TC78737 |
1608 |
100.0 |
100.0 |
similar to UniRef100_A7P4W2 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (52%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v1798560.1 |
length: 444 aa. |
| IPR021099 |
Plant organelle RNA recognition domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF11955 |
PORR |
5.7e-117 |
44-384 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
123-147 |
| HMMPanther |
PTHR31476 |
FAMILY |
3e-127 |
2-444 |
| HMMPanther |
PTHR31476:SF0 |
SUBFAMILY |
3e-127 |
2-444 |
| Seg |
seg |
seg |
NA |
390-400 |
- Wolf-PSORT
Lj1g3v1798560.1 chlo 8, nucl 4, mito 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v1798560.1 |
|