Miyakogusa Predicted Gene

Lj1g3v1788420.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J944_MEDTR 1679 83.4 90.5 (tr|G7J944) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_3g105370 PE=4 SV=1
TAIR_pep AT4G33170.1 1176 59.5 75.2 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15995701-15998673 REVERSE LENGTH=990
Medicago Medtr3g105370.2 1679 83.4 90.5 | pentatricopeptide (PPR) repeat protein | HC | chr3:48574897-48577818 | 20130731
Soybean Glyma04g06020.1 1399 77.6 86.8  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1788420.1 length: 985 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0042 95-111
174-197
276-304
348-373
376-405
450-470
479-507
651-675
752-780
HMMPfam PF13041 PPR_2 2e-10 199-245
576-622
680-725
HMMPfam PF13812 PPR_3 0.72 65-85
HMMTigr TIGR00756 PPR: 0.0017 201-234
479-511
579-613
652-676
681-713
753-780
ProfileScan PS51375 PPR 6.654 60-94
199-233
168-198
273-307
374-408
343-373
308-342
476-510
445-475
409-444
577-611
546-576
678-712
647-677
612-646
713-748
749-783
815-849
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.9e-08 765-839
no_ID  
HMMPanther PTHR24015 FAMILY 0 45-985
HMMPanther PTHR24015:SF15 OS10G0566900 0 45-985
HMMPfam PF14432 DYW_deaminase 4.7e-19 857-974
superfamily SSF48452 TPR-like 5e-05 779-960
Wolf-PSORT
Lj1g3v1788420.1	chlo 8, cyto 3, nucl 1, extr 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1788420.1