| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | K7KT25_SOYBN | 467 | 54.9 | 66.3 | (tr|K7KT25) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep | AT5G56510.1 | 263 | 34.6 | 53.8 | | Symbols: APUM12, PUM12 | pumilio 12 | chr5:22881721-22883842 FORWARD LENGTH=596 |
| Medicago | Medtr3g102650.1 | 382 | 58.8 | 75.5 | | pumilio-family RNA-binding repeatprotein | LC | chr3:47305805-47309075 | 20130731 |
| Soybean | Glyma06g04730.1 | 370 | 65.4 | 77.1 | |
| LJGI | gnl|LJGI|FS324567 | 131 | 85.4 | 85.4 | similar to UniRef100_Q9SD33 Cluster: UPF0183 protein At3g51130; n=1; Arabidopsis thaliana|Rep: UPF0183 protein At3g51130 - Arabidopsis thaliana (Mouse-ear cress), partial (6%) |
| Lj1g3v1708950.1 | length: 451 aa. | |||
| IPR001313 | Pumilio RNA-binding repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003723 | RNA binding | ||
| HMMPfam | PF00806 | PUF | 8.8e-06 | 164-197 279-310 349-373 |
| HMMSmart | SM00025 | Pumilio-like | 1 | 128-163 164-199 203-239 240-275 276-311 312-347 348-383 386-421 |
| ProfileScan | PS50302 | PUM | 8.617 | 164-199 124-163 203-239 240-275 276-311 312-347 384-421 348-383 |
| ProfileScan | PS50303 | PUM_HD | 72.519 | 105-447 |
| IPR011989 | Armadillo-like helical | |||
| Gene3D | G3DSA:1.25.10.10 | no description | 1.4e-84 | 129-445 |
| IPR016024 | Armadillo-type fold | |||
| Molecular Function | GO:0005488 | binding | ||
| superfamily | SSF48371 | ARM | 9e-80 | 127-445 |
| no_ID | ||||
| HMMPanther | PTHR12537 | RNA | 3.3e-114 | 130-442 |
| HMMPanther | PTHR12537:SF13 | PUMILIO-RELATED | 3.3e-114 | 130-442 |
| Seg | seg | seg | NA | 12-21 |
Lj1g3v1708950.1 chlo 6, nucl 2.5, mito 2, extr 2, cysk_nucl 2
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj1g3v1708950.1 |