Miyakogusa Predicted Gene

Lj1g3v1648780.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JTH6_SOYBN 427 80.0 84.7 (tr|I1JTH6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G47490.2 303 66.7 78.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C | chr1:17424801-17426114 FORWARD LENGTH=310
Medicago Medtr3g101370.2 382 77.7 81.6 | polyadenylate-binding protein RBP47C | HC | chr3:46662442-46658399 | 20130731
Soybean Glyma04g03950.2 427 80.0 84.7  
LJGI gnl|LJGI|TC74415 1318 99.9 99.9 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (45%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1648780.1 length: 295 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 6.7e-15 92-159
185-255
HMMSmart SM00360 RNA 5e-18 91-166
184-258
ProfileScan PS50102 RRM 16.688 90-170
183-262
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.8e-21 67-169
175-277
no_ID  
HMMPanther PTHR24012 FAMILY 3.3e-110 82-291
HMMPanther PTHR24012:SF55 SUBFAMILY 3.3e-110 82-291
Seg seg seg NA 10-40
265-281
superfamily SSF54928 RNA-binding 3.3e-34 88-269
Wolf-PSORT
Lj1g3v1648780.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1648780.1