Miyakogusa Predicted Gene

Lj1g3v1605280.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KHW3_SOYBN 531 68.8 79.7 (tr|K7KHW3) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G48460.1 341 61.3 75.9 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17911469-17913149 FORWARD LENGTH=340

Medicago Medtr3g111540.1 531 69.6 82.0 | transmembrane protein, putative | HC | chr3:52121922-52125125 | 20130731

Soybean Glyma06g03820.1 518 66.9 78.4

LJGI gnl|LJGI|BP037426 476 100.0 100.0 similar to UniRef100_A7NTL1 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)

Putative transmembrane regions

From To

TM segments
SOSUI 148 170

181 203

229 251

256 278

283 305

330 352

Wolf-PSORT

Lj1g3v1605280.1 chlo 12, nucl 1, cyto 1, cyto_nucl 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1605280.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KHW3_SOYBN	531	68.8	79.7	(tr\|K7KHW3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G48460.1	341	61.3	75.9	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:17911469-17913149 FORWARD LENGTH=340
Medicago	Medtr3g111540.1	531	69.6	82.0	\| transmembrane protein, putative \| HC \| chr3:52121922-52125125 \| 20130731
Soybean	Glyma06g03820.1	518	66.9	78.4
LJGI	gnl\|LJGI\|BP037426	476	100.0	100.0	similar to UniRef100_A7NTL1 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)