Miyakogusa Predicted Gene

Lj1g3v1560060.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J535_MEDTR 734 78.4 83.0 (tr|G7J535) MscS family inner membrane protein ynaI OS=Medicago truncatula GN=MTR_3g100280 PE=4 SV=1
TAIR_pep AT5G10490.2 471 57.0 67.9 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836 REVERSE LENGTH=645
Medicago Medtr3g100280.2 734 78.4 83.0 | mechanosensitive ion channel-like protein | HC | chr3:46095570-46102000 | 20130731
Soybean Glyma04g10060.2 706 76.4 81.1  
LJGI gnl|LJGI|FS362116 833 100.0 100.0 similar to UniRef100_A6XN19 Cluster: Expressed protein; n=1; Prunus persica|Rep: Expressed protein - Prunus persica (Peach), partial (6%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1560060.1 length: 468 aa.
IPR006685 Mechanosensitive ion channel MscS
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00924 MS_channel 1.1e-29 8-216
IPR010920 Like-Sm (LSM) domain
superfamily SSF50182 Sm-like 5.2e-11 50-121
no_ID  
Gene3D G3DSA:2.30.30.60 no description 1.1e-05 66-119
HMMPanther PTHR32210 FAMILY 5.1e-154 1-438
HMMPanther PTHR32210:SF0 SUBFAMILY 5.1e-154 1-438
Seg seg seg NA 9-20
34-48
Putative transmembrane regions
  From To
TM segments
SOSUI		 7 29
32 54
Wolf-PSORT
Lj1g3v1560060.1	vacu 6, chlo 3, E.R._vacu 3, nucl 1, cyto 1, mito 1, plas 1, extr 1, cyto_nucl 1, nucl_plas 1, mito_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1560060.1