Miyakogusa Predicted Gene

Lj1g3v1548830.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1K9S0_SOYBN 1079 76.4 83.6 (tr|I1K9S0) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G24490.2 643 51.6 65.6 | Symbols: | RAB geranylgeranyl transferase alpha subunit 1 | chr4:12655330-12658103 REVERSE LENGTH=678

Medicago Medtr3g100110.1 1041 73.8 80.3 | RAB geranylgeranyl transferase alpha protein | HC | chr3:45994485-45989935 | 20130731

Soybean Glyma06g10210.1 1079 76.4 83.6

LJGI gnl|LJGI|TC58166 2159 99.2 99.2 similar to UniRef100_A7NUL1 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (38%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v1548830.1 length: 693 aa.

IPR001611 Leucine-rich repeat

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

ProfileScan PS51450 LRR 4.847 549-570
571-592
596-619
657-677

IPR002088 Protein prenyltransferase, alpha subunit

Molecular Function GO:0008318 protein prenyltransferase activity

Biological Process GO:0018342 protein prenylation

HMMPfam PF01239 PPTA 2.4e-05 43-71
86-114
121-146
156-185
203-230

ProfileScan PS51147 PFTA 11.735 40-74
83-117
118-152
153-187
199-233

IPR025875 Leucine rich repeat 4

HMMPfam PF12799 LRR_4 1.6e-07 551-588

no_ID

Gene3D G3DSA:1.25.40.120 no description 7.4e-90 415-497

Gene3D G3DSA:3.80.10.10 no description 1.7e-16 646-691

HMMPanther PTHR11129 PROTEIN 2.1e-146 4-596

HMMPanther PTHR11129:SF2 RAB 2.1e-146 4-596

Seg seg seg NA 70-83
339-357

superfamily SSF48439 Protein 1.3e-70 22-505

superfamily SSF52058 L 2.6e-17 509-689

Wolf-PSORT

Lj1g3v1548830.1 nucl 7, chlo 3, cyto 2, chlo_mito 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1548830.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1K9S0_SOYBN	1079	76.4	83.6	(tr\|I1K9S0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G24490.2	643	51.6	65.6	\| Symbols: \| RAB geranylgeranyl transferase alpha subunit 1 \| chr4:12655330-12658103 REVERSE LENGTH=678
Medicago	Medtr3g100110.1	1041	73.8	80.3	\| RAB geranylgeranyl transferase alpha protein \| HC \| chr3:45994485-45989935 \| 20130731
Soybean	Glyma06g10210.1	1079	76.4	83.6
LJGI	gnl\|LJGI\|TC58166	2159	99.2	99.2	similar to UniRef100_A7NUL1 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (38%)

IPR001611	Leucine-rich repeat
Lj1g3v1548830.1				length: 693 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
ProfileScan	PS51450	LRR	4.847	549-570 571-592 596-619 657-677
IPR002088	Protein prenyltransferase, alpha subunit
Molecular Function	GO:0008318	protein prenyltransferase activity
Biological Process	GO:0018342	protein prenylation
HMMPfam	PF01239	PPTA	2.4e-05	43-71 86-114 121-146 156-185 203-230
ProfileScan	PS51147	PFTA	11.735	40-74 83-117 118-152 153-187 199-233
IPR025875	Leucine rich repeat 4
HMMPfam	PF12799	LRR_4	1.6e-07	551-588
no_ID
Gene3D	G3DSA:1.25.40.120	no description	7.4e-90	415-497
Gene3D	G3DSA:3.80.10.10	no description	1.7e-16	646-691
HMMPanther	PTHR11129	PROTEIN	2.1e-146	4-596
HMMPanther	PTHR11129:SF2	RAB	2.1e-146	4-596
Seg	seg	seg	NA	70-83 339-357
superfamily	SSF48439	Protein	1.3e-70	22-505
superfamily	SSF52058	L	2.6e-17	509-689