Miyakogusa Predicted Gene

Lj1g3v1548780.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J4K7_MEDTR 176 44.9 51.4 (tr|G7J4K7) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_3g100100 PE=4 SV=1
TAIR_pep AT5G65520.1 79.0 31.2 49.4 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26189876-26190496 REVERSE LENGTH=206
Medicago Medtr3g100100.1 176 44.9 51.4 | TPR domain protein | HC | chr3:45987094-45989713 | 20130731
Soybean Glyma06g10220.1 166 45.1 52.7  
LJGI gnl|LJGI|TC64653 1338 100.0 100.0 weakly similar to UniRef100_A7R176 Cluster: Chromosome undetermined scaffold_340, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_340, whole genome shotgun sequence - Vitis vinifera (Grape), partial (68%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1548780.1 length: 224 aa.
IPR011990 Tetratricopeptide-like helical
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 8.4e-19 81-214
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 15.728 81-209
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
HMMSmart SM00028 Tetratricopeptide 4.5e-06 139-175
176-209
ProfileScan PS50005 TPR 10.827 142-175
176-209
no_ID  
HMMPanther PTHR26312 FAMILY 1.1e-29 1-207
HMMPanther PTHR26312:SF25 SUBFAMILY 1.1e-29 1-207
HMMPfam PF13371 TPR_9 0.74 82-125
HMMPfam PF13414 TPR_11 5.2e-10 154-207
Seg seg seg NA 13-33
65-90
116-135
187-202
superfamily SSF48452 TPR-like 6.3e-19 89-216
Putative transmembrane regions
  From To
TM segments
SOSUI		 10 32
Wolf-PSORT
Lj1g3v1548780.1	chlo 5, plas 2.5, E.R._plas 2.5, mito 2, E.R. 1.5, cyto 1, extr 1, vacu 1, cyto_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1548780.1