Miyakogusa Predicted Gene

Lj1g3v1548700.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL K7KU83_SOYBN 4009 85.9 90.9 (tr|K7KU83) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G58230.1 2982 64.9 79.0 | Symbols: | binding | chr1:21566331-21578865 FORWARD LENGTH=2604
Medicago Medtr3g100060.1 3985 85.6 90.8 | BEACH domain LvsC-like protein, putative | HC | chr3:45964613-45936555 | 20130731
Soybean Glyma06g10250.1 2353 88.3 92.8  
LJGI gnl|LJGI|BP033680 1112 99.5 99.5 similar to UniRef100_A7NUK9 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1548700.3 length: 2244 aa.
IPR000409 BEACH domain
method AccNumber shortName E-value location
Gene3D G3DSA:1.10.1540.10 no description 3.5e-131 1583-1864
HMMPfam PF02138 Beach 6.3e-110 1587-1864
HMMSmart SM01026 Beige/BEACH 7.3e-198 1586-1864
ProfileScan PS50197 BEACH 120.455 1574-1864
superfamily SSF81837 BEACH 9e-122 1560-1864
IPR001680 WD40 repeat
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00078 2001-2036
2065-2097
HMMSmart SM00320 WD40 1.4 1997-2036
2062-2101
2104-2144
2146-2184
2187-2225
ProfileScan PS50082 WD_REPEATS_2 14.318 2004-2045
IPR008985 Concanavalin A-like lectin/glucanases superfamily
superfamily SSF49899 Concanavalin 2e-21 76-263
IPR013320 Concanavalin A-like lectin/glucanase, subgroup
Gene3D G3DSA:2.60.120.200 no description 3.9e-12 77-264
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.7e-44 1974-2227
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 14.951 2004-2234
superfamily SSF50978 WD40 6.4e-43 1883-2229
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 2023-2037
IPR023362 PH-BEACH domain
Gene3D G3DSA:2.30.29.40 no description 5.1e-19 1486-1546
no_ID  
HMMPanther PTHR13743 BEIGE/BEACH-RELATED 5.3e-263 2-2233
HMMPfam PF13385 Laminin_G_3 1.3e-11 80-254
Seg seg seg NA 548-553
628-642
752-761
806-817
1009-1017
1386-1397
superfamily SSF50729 PH 3.8e-24 1396-1553
Wolf-PSORT
Lj1g3v1548700.3	nucl 10, chlo 1, plas 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1548700.3