Miyakogusa Predicted Gene

Lj1g3v1526020.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J4G7_MEDTR 353 60.5 70.5 (tr|G7J4G7) RING-H2 finger protein ATL1N OS=Medicago truncatula GN=MTR_3g099650 PE=2 SV=1
TAIR_pep AT1G72200.1 189 40.5 54.9 | Symbols: | RING/U-box superfamily protein | chr1:27169935-27171149 REVERSE LENGTH=404
Medicago Medtr3g099650.1 353 60.5 70.5 | RING-H2 zinc finger protein, putative | HC | chr3:45686700-45688504 | 20130731
Soybean Glyma02g37340.1 306 56.4 62.6  
LJGI gnl|LJGI|TC78125 1417 99.9 99.9 similar to UniRef100_Q84KA9 Cluster: RING/C3HC4/PHD zinc finger-like protein; n=2; Cucumis melo|Rep: RING/C3HC4/PHD zinc finger-like protein - Cucumis melo (Muskmelon), partial (27%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1526020.1 length: 368 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 1.1e-15 138-182
HMMSmart SM00184 Ring 2.1e-06 139-180
ProfileScan PS50089 ZF_RING_2 12.740 139-181
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.6e-18 136-184
no_ID  
HMMPanther PTHR22764 RING 4e-47 58-308
HMMPanther PTHR22764:SF10 PUTATIVE 4e-47 58-308
Seg seg seg NA 20-42
64-74
superfamily SSF57850 RING/U-box 2.4e-20 109-187
Putative transmembrane regions
  From To
TM segments
SOSUI		 16 38
61 83
Wolf-PSORT
Lj1g3v1526020.1	vacu 7, chlo 3, extr 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1526020.1