Miyakogusa Predicted Gene

Lj1g3v1500470.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KL70_SOYBN 679 74.2 78.3 (tr|K7KL70) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G50530.1 518 57.2 70.3 | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein | chr5:20571876-20574922 REVERSE LENGTH=548

Medicago Medtr3g099100.1 659 71.3 78.6 | CBS/octicosapeptide/phox/Bemp1 (PB1) domain protein | HC | chr3:45426670-45434715 | 20130731

Soybean Glyma04g37370.1 680 74.2 78.3

LJGI gnl|LJGI|AV417825 793 99.8 99.8 similar to UniRef100_Q9LUF7 Cluster: Emb|CAB86899.1; n=2; Arabidopsis thaliana|Rep: Emb|CAB86899.1 - Arabidopsis thaliana (Mouse-ear cress), partial (18%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v1500470.2 length: 462 aa.

IPR000270 Phox/Bem1p

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00564 PB1 1.7e-12 329-412

HMMSmart SM00666 PB1 1.8e-15 329-414

IPR000644 Cystathionine beta-synthase, core

Molecular Function GO:0005515 protein binding

HMMPfam PF00571 CBS 5.1e-05 43-84
152-198
210-256

HMMSmart SM00116 Domain 10 50-94
152-199
217-265

ProfileScan PS51371 CBS 9.639 47-105
1-38
146-205
214-275

no_ID

Gene3D G3DSA:3.10.20.240 no description 4.1e-20 326-412

Gene3D G3DSA:3.10.580.10 no description 1.4e-24 1-93
144-258

HMMPanther PTHR11911 INOSINE-5-MONOPHOSPHATE 2.1e-161 1-361

HMMPanther PTHR11911:SF18 MG2+ 2.1e-161 1-361

Seg seg seg NA 103-119
250-268
384-397
438-452

superfamily SSF54277 CAD 3.2e-20 317-412

superfamily SSF54631 CBS-domain 4.2e-06 200-267
31-104
121-195

Putative transmembrane regions

From To

TM segments
SOSUI 438 459

Wolf-PSORT

Lj1g3v1500470.2 cyto 7, chlo 3, vacu 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1500470.2 Not targeted -18.143 -8.893 -0.245 10.62% -9.005

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KL70_SOYBN	679	74.2	78.3	(tr\|K7KL70) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G50530.1	518	57.2	70.3	\| Symbols: \| CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein \| chr5:20571876-20574922 REVERSE LENGTH=548
Medicago	Medtr3g099100.1	659	71.3	78.6	\| CBS/octicosapeptide/phox/Bemp1 (PB1) domain protein \| HC \| chr3:45426670-45434715 \| 20130731
Soybean	Glyma04g37370.1	680	74.2	78.3
LJGI	gnl\|LJGI\|AV417825	793	99.8	99.8	similar to UniRef100_Q9LUF7 Cluster: Emb\|CAB86899.1; n=2; Arabidopsis thaliana\|Rep: Emb\|CAB86899.1 - Arabidopsis thaliana (Mouse-ear cress), partial (18%)

IPR000270	Phox/Bem1p
Lj1g3v1500470.2				length: 462 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00564	PB1	1.7e-12	329-412
HMMSmart	SM00666	PB1	1.8e-15	329-414
IPR000644	Cystathionine beta-synthase, core
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00571	CBS	5.1e-05	43-84 152-198 210-256
HMMSmart	SM00116	Domain	10	50-94 152-199 217-265
ProfileScan	PS51371	CBS	9.639	47-105 1-38 146-205 214-275
no_ID
Gene3D	G3DSA:3.10.20.240	no description	4.1e-20	326-412
Gene3D	G3DSA:3.10.580.10	no description	1.4e-24	1-93 144-258
HMMPanther	PTHR11911	INOSINE-5-MONOPHOSPHATE	2.1e-161	1-361
HMMPanther	PTHR11911:SF18	MG2+	2.1e-161	1-361
Seg	seg	seg	NA	103-119 250-268 384-397 438-452
superfamily	SSF54277	CAD	3.2e-20	317-412
superfamily	SSF54631	CBS-domain	4.2e-06	200-267 31-104 121-195