Miyakogusa Predicted Gene

Lj1g3v1486310.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J3D7_MEDTR 651 63.7 70.4 (tr|G7J3D7) SWI/SNF complex subunit SMARCC2 OS=Medicago truncatula GN=MTR_3g099000 PE=4 SV=1
TAIR_pep AT2G47620.1 390 44.1 56.8 | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose nonfermenting 3A | chr2:19532034-19534251 FORWARD LENGTH=512
Medicago Medtr3g099000.2 651 63.7 70.4 | SWI/SNF complex protein | HC | chr3:45370551-45376366 | 20130731
Soybean Glyma04g42200.1 648 60.8 68.3  
LJGI gnl|LJGI|BW633102 912 100.0 100.0 similar to UniRef100_A7PHK4 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1486310.1 length: 556 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 1.3e-06 258-297
HMMSmart SM00717 SANT 2.6e-06 255-303
IPR007526 SWIRM domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF04433 SWIRM 6.1e-27 25-112
ProfileScan PS50934 SWIRM 25.416 24-121
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 0.00031 257-294
superfamily SSF46689 Homeodomain-like 6.5e-10 30-114
249-317
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 1.1e-27 25-121
IPR017884 SANT domain
ProfileScan PS51293 SANT 17.394 254-305
no_ID  
Coil coil coiled-coil NA 517-538
HMMPanther PTHR12802 SWI/SNF 1.7e-166 16-556
HMMPanther PTHR12802:SF2 SWI/SNF 1.7e-166 16-556
Seg seg seg NA 113-141
164-181
313-327
395-406
467-488
Wolf-PSORT
Lj1g3v1486310.1	nucl 8, cyto 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1486310.1