Miyakogusa Predicted Gene

Lj1g3v1384110.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SXT9_LOTJA 683 93.1 93.1 (tr|I3SXT9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT2G15790.1 537 71.1 81.9 | Symbols: SQN, CYP40 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361
Medicago Medtr4g086760.1 603 80.6 87.0 | peptidyl-prolyl cis-trans isomerase D | HC | chr4:34013626-34009945 | 20130731
Soybean Glyma02g15250.3 618 82.3 88.6  
LJGI gnl|LJGI|TC58586 2139 99.9 99.9 similar to UniRef100_A7P9E4 Cluster: Peptidyl-prolyl cis-trans isomerase; n=1; Vitis vinifera|Rep: Peptidyl-prolyl cis-trans isomerase - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1384110.1 length: 360 aa.
IPR001440 Tetratricopeptide TPR-1
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00515 TPR_1 2.7e-08 297-330
IPR002130 Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain
Molecular Function GO:0003755 peptidyl-prolyl cis-trans isomerase activity    
Biological Process GO:0006457 protein folding    
FPrintScan PR00153 CSAPPISMRASE 2.4e-36 24-39
61-73
104-119
119-131
132-147
HMMPfam PF00160 Pro_isomerase 8.9e-48 7-170
ProfileScan PS50072 CSA_PPIASE_2 43.329 7-171
superfamily SSF50891 Cyclophilin-like 5.6e-72 1-172
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2e-29 209-351
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 15.796 211-244
263-330
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
HMMSmart SM00028 Tetratricopeptide 1.3e-07 211-244
297-330
ProfileScan PS50005 TPR 13.806 211-244
297-330
IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site
Molecular Function GO:0003755 peptidyl-prolyl cis-trans isomerase activity    
Biological Process GO:0006457 protein folding    
PatternScan PS00170 CSA_PPIASE_1 NA 56-73
no_ID  
Gene3D G3DSA:2.40.100.10 no description 1.1e-74 3-171
HMMPanther PTHR11071 PEPTIDYL-PROLYL 3.4e-216 1-360
HMMPanther PTHR11071:SF110PEPTIDYL-PROLYL CIS-TRANS 3.4e-216 1-360
HMMPfam PF13414 TPR_11 1.7e-06 214-290
Seg seg seg NA 72-83
273-285
superfamily SSF48452 TPR-like 2.3e-25 204-359
Wolf-PSORT
Lj1g3v1384110.1	cyto 6, chlo 3, cyto_pero 3, cyto_E.R. 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1384110.1