Miyakogusa Predicted Gene
- Lj1g3v1353700.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KLF0_SOYBN |
704 |
93.0 |
96.1 |
(tr|K7KLF0) DNA polymerase OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT5G63960.1 |
634 |
83.8 |
91.3 |
| Symbols: EMB2780 | DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases | chr5:25599597-25606672 FORWARD LENGTH=1095 |
| Medicago |
Medtr3g096525.2 |
670 |
89.4 |
93.9 |
| DNA polymerase delta catalytic subunit | HC | chr3:44150897-44134651 | 20130731 |
| Soybean |
Glyma04g38800.2 |
704 |
93.0 |
96.1 |
|
| LJGI |
gnl|LJGI|AV780629 |
321 |
98.8 |
98.8 |
homologue to UniRef100_A7QST5 Cluster: DNA polymerase; n=1; Vitis vinifera|Rep: DNA polymerase - Vitis vinifera (Grape), partial (6%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v1353700.1 |
length: 358 aa. |
| IPR006134 |
DNA-directed DNA polymerase, family B, multifunctional domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003887 |
DNA-directed DNA polymerase activity |
|
|
| Biological Process |
GO:0006260 |
DNA replication |
|
|
| HMMPfam |
PF00136 |
DNA_pol_B |
6.8e-75 |
1-252 |
| IPR017964 |
DNA-directed DNA polymerase, family B, conserved site |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| Molecular Function |
GO:0003887 |
DNA-directed DNA polymerase activity |
|
|
| Biological Process |
GO:0006139 |
nucleobase-containing compound metabolic process |
|
|
| PatternScan |
PS00116 |
DNA_POLYMERASE_B |
NA |
27-35 |
| IPR025687 |
C4-type zinc-finger of DNA polymerase delta |
| HMMPfam |
PF14260 |
zf-C4pol |
7.1e-25 |
283-355 |
| no_ID |
|
| HMMPanther |
PTHR10322 |
DNA |
6.7e-241 |
1-358 |
| HMMPanther |
PTHR10322:SF11 |
DNA |
6.7e-241 |
1-358 |
| superfamily |
SSF56672 |
DNA/RNA |
3.1e-71 |
1-263 |
- Wolf-PSORT
Lj1g3v1353700.1 cyto 10, nucl 2, chlo 1, golg 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v1353700.1 |
|