Miyakogusa Predicted Gene

Lj1g3v1317020.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KBJ8_SOYBN 786 83.4 89.4 (tr|I1KBJ8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G33440.1 635 66.7 81.1 | Symbols: | Pectin lyase-like superfamily protein | chr4:16092020-16094732 FORWARD LENGTH=475
Medicago Medtr3g096330.1 767 80.7 88.7 | glycoside hydrolase family 28 protein | HC | chr3:44026955-44022720 | 20130731
Soybean Glyma06g15940.1 786 83.4 89.4  
LJGI gnl|LJGI|FS321740 1120 100.0 100.0 similar to UniRef100_A7QB41 Cluster: Chromosome chr4 scaffold_73, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_73, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1317020.1 length: 481 aa.
IPR000743 Glycoside hydrolase, family 28
method AccNumber shortName E-value location
Molecular Function GO:0004650 polygalacturonase activity    
Biological Process GO:0005975 carbohydrate metabolic process    
HMMPfam PF00295 Glyco_hydro_28 3.7e-39 176-455
IPR006626 Parallel beta-helix repeat
HMMSmart SM00710 Parallel 26 246-272
273-305
307-329
335-356
IPR011050 Pectin lyase fold/virulence factor
superfamily SSF51126 Pectin 7.3e-97 59-468
IPR012334 Pectin lyase fold
Gene3D G3DSA:2.160.20.10 no description 5e-109 75-457
no_ID  
HMMPanther PTHR31339 FAMILY 9.9e-180 32-477
HMMPanther PTHR31339:SF0 SUBFAMILY 9.9e-180 32-477
Seg seg seg NA 23-32
Putative transmembrane regions
  From To
TM segments
SOSUI		 19 41
Wolf-PSORT
Lj1g3v1317020.1	cyto 12, mito 1, E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1317020.1