Miyakogusa Predicted Gene

Lj1g3v1219030.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1JY78_SOYBN 1029 76.5 82.2 (tr|I1JY78) Uncharacterized protein OS=Glycine max PE=3 SV=1

TAIR_pep AT5G64840.1 952 71.8 77.6 | Symbols: GCN5, ATGCN5 | general control non-repressible 5 | chr5:25916956-25919693 REVERSE LENGTH=692

Medicago Medtr3g095010.1 1010 74.6 80.1 | ABC transporter F family protein | HC | chr3:43370536-43376310 | 20130731

Soybean Glyma04g39670.1 1029 76.5 82.2

LJGI gnl|LJGI|FS322894 842 100.0 100.0 similar to UniRef100_A1Z2V9 Cluster: ABC transporter 1-like protein; n=1; Rhodiola fastigiata|Rep: ABC transporter 1-like protein - Rhodiola fastigiata, partial (39%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v1219030.1 length: 673 aa.

IPR003439 ABC transporter-like

method AccNumber shortName E-value location

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0016887 ATPase activity

HMMPfam PF00005 ABC_tran 2.1e-14 145-296
472-580

ProfileScan PS50893 ABC_TRANSPORTER_2 18.841 106-364
433-648

IPR003593 AAA+ ATPase domain

Molecular Function GO:0000166 nucleotide binding

Molecular Function GO:0017111 nucleoside-triphosphatase activity

HMMSmart SM00382 ATPases 7.6e-13 130-345
457-625

IPR017871 ABC transporter, conserved site

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0016887 ATPase activity

PatternScan PS00211 ABC_TRANSPORTER_1 NA 268-282
552-566

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 1.9e-49 435-626
106-351

no_ID

Gene3D G3DSA:3.40.50.300 no description 1.2e-50 230-378
434-666

HMMPanther PTHR19211 ATP-BINDING 0 73-669

HMMPanther PTHR19211:SF26 SUBFAMILY 0 73-669

HMMPfam PF12848 ABC_tran_2 1.5e-17 335-422

Seg seg seg NA 40-56
66-75
128-141
282-292
397-411
641-656

Wolf-PSORT

Lj1g3v1219030.1 cyto 6.5, chlo 6, cyto_E.R. 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1219030.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1JY78_SOYBN	1029	76.5	82.2	(tr\|I1JY78) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep	AT5G64840.1	952	71.8	77.6	\| Symbols: GCN5, ATGCN5 \| general control non-repressible 5 \| chr5:25916956-25919693 REVERSE LENGTH=692
Medicago	Medtr3g095010.1	1010	74.6	80.1	\| ABC transporter F family protein \| HC \| chr3:43370536-43376310 \| 20130731
Soybean	Glyma04g39670.1	1029	76.5	82.2
LJGI	gnl\|LJGI\|FS322894	842	100.0	100.0	similar to UniRef100_A1Z2V9 Cluster: ABC transporter 1-like protein; n=1; Rhodiola fastigiata\|Rep: ABC transporter 1-like protein - Rhodiola fastigiata, partial (39%)

IPR003439	ABC transporter-like
Lj1g3v1219030.1				length: 673 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0016887	ATPase activity
HMMPfam	PF00005	ABC_tran	2.1e-14	145-296 472-580
ProfileScan	PS50893	ABC_TRANSPORTER_2	18.841	106-364 433-648
IPR003593	AAA+ ATPase domain
Molecular Function	GO:0000166	nucleotide binding
Molecular Function	GO:0017111	nucleoside-triphosphatase activity
HMMSmart	SM00382	ATPases	7.6e-13	130-345 457-625
IPR017871	ABC transporter, conserved site
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0016887	ATPase activity
PatternScan	PS00211	ABC_TRANSPORTER_1	NA	268-282 552-566
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	1.9e-49	435-626 106-351
no_ID
Gene3D	G3DSA:3.40.50.300	no description	1.2e-50	230-378 434-666
HMMPanther	PTHR19211	ATP-BINDING	0	73-669
HMMPanther	PTHR19211:SF26	SUBFAMILY	0	73-669
HMMPfam	PF12848	ABC_tran_2	1.5e-17	335-422
Seg	seg	seg	NA	40-56 66-75 128-141 282-292 397-411 641-656