Miyakogusa Predicted Gene

Lj1g3v1169710.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SIC0_LOTJA 288 76.8 76.8 (tr|I3SIC0) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G05280.1 118 49.6 60.2 | Symbols: | RING/U-box superfamily protein | chr5:1565509-1566039 REVERSE LENGTH=176
Medicago Medtr3g094000.1 175 60.7 69.0 | RING-H2 zinc finger protein | HC | chr3:42946379-42944478 | 20130731
Soybean Glyma06g14830.1 196 54.3 63.5  
LJGI gnl|LJGI|AV770943 474 98.4 98.4 similar to UniRef100_A7QFN6 Cluster: Chromosome chr8 scaffold_88, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_88, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1169710.1 length: 206 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 4.9e-18 114-159
HMMSmart SM00184 Ring 1.8e-07 115-156
ProfileScan PS50089 ZF_RING_2 12.209 115-157
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 3.5e-21 113-160
no_ID  
HMMPanther PTHR14155 RING 7.9e-38 9-184
Seg seg seg NA 3-16
38-54
102-113
169-183
superfamily SSF57850 RING/U-box 4.3e-22 86-163
Putative transmembrane regions
  From To
TM segments
SOSUI		 42 64
91 113
Wolf-PSORT
Lj1g3v1169710.1	chlo 7, E.R. 5, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1169710.1