Miyakogusa Predicted Gene

Lj1g3v1147560.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7MRX0_SOYBN 1192 80.1 89.3 (tr|K7MRX0) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G25970.1 766 53.7 72.3 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:9500116-9502221 REVERSE LENGTH=701

Medicago Medtr8g063450.1 1128 77.5 84.6 | PPR containing plant-like protein | HC | chr8:26602939-26605163 | 20130731

Soybean Glyma18g18220.1 1004 81.0 90.1

LJGI --No_Hits--

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v1147560.1 length: 707 aa.

IPR002885 Pentatricopeptide repeat

method AccNumber shortName E-value location

HMMPfam PF01535 PPR 0.32 33-58
164-194
545-566

HMMPfam PF13041 PPR_2 1.9e-08 61-106
264-310
366-414
468-515

HMMPfam PF13812 PPR_3 0.0089 136-161

HMMTigr TIGR00756 PPR: 7.1e-06 63-96
137-163
369-402
471-503

ProfileScan PS51375 PPR 5.316 61-95
30-60
131-165
96-130
166-196
264-298
299-333
367-401
334-366
468-502
437-467
402-436
503-538
539-569
605-639
571-601

no_ID

HMMPanther PTHR24015 FAMILY 2.6e-289 15-675

HMMPanther PTHR24015:SF77 PENTATRICOPEPTIDE 2.6e-289 15-675

Wolf-PSORT

Lj1g3v1147560.1 chlo 10, nucl 2, extr 1, E.R. 1, cyto_nucl 1, cysk_nucl 1, nucl_plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1147560.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7MRX0_SOYBN	1192	80.1	89.3	(tr\|K7MRX0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G25970.1	766	53.7	72.3	\| Symbols: \| Pentatricopeptide repeat (PPR) superfamily protein \| chr3:9500116-9502221 REVERSE LENGTH=701
Medicago	Medtr8g063450.1	1128	77.5	84.6	\| PPR containing plant-like protein \| HC \| chr8:26602939-26605163 \| 20130731
Soybean	Glyma18g18220.1	1004	81.0	90.1
LJGI	--No_Hits--

IPR002885	Pentatricopeptide repeat
Lj1g3v1147560.1				length: 707 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF01535	PPR	0.32	33-58 164-194 545-566
HMMPfam	PF13041	PPR_2	1.9e-08	61-106 264-310 366-414 468-515
HMMPfam	PF13812	PPR_3	0.0089	136-161
HMMTigr	TIGR00756	PPR:	7.1e-06	63-96 137-163 369-402 471-503
ProfileScan	PS51375	PPR	5.316	61-95 30-60 131-165 96-130 166-196 264-298 299-333 367-401 334-366 468-502 437-467 402-436 503-538 539-569 605-639 571-601
no_ID
HMMPanther	PTHR24015	FAMILY	2.6e-289	15-675
HMMPanther	PTHR24015:SF77	PENTATRICOPEPTIDE	2.6e-289	15-675