Miyakogusa Predicted Gene

Lj1g3v1134040.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JYC9_SOYBN 537 72.1 78.0 (tr|I1JYC9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G38560.1 314 46.1 57.2 | Symbols: TFIIS | transcript elongation factor IIS | chr2:16134802-16136319 FORWARD LENGTH=378
Medicago Medtr3g093800.1 496 67.5 74.6 | transcription elongation factor S-II, putative | HC | chr3:42860884-42857714 | 20130731
Soybean Glyma04g40150.1 537 72.1 78.0  
LJGI gnl|LJGI|TC73295 1140 100.0 100.0 weakly similar to UniRef100_A7QFP8 Cluster: Chromosome chr8 scaffold_88, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_88, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1134040.1 length: 369 aa.
IPR001222 Zinc finger, TFIIS-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01096 TFIIS_C 8.9e-18 329-367
HMMSmart SM00440 C2C2 4.8e-21 329-368
PatternScan PS00466 ZF_TFIIS_1 NA 331-366
ProfileScan PS51133 ZF_TFIIS_2 14.381 327-367
IPR003617 Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMSmart SM00509 Domain 6e-20 8-85
IPR003618 Transcription elongation factor S-II, central domain
Biological Process GO:0006351 transcription, DNA-dependent    
Gene3D G3DSA:1.10.472.30 no description 4e-30 185-299
HMMPfam PF07500 TFIIS_M 9.9e-35 198-317
ProfileScan PS51321 TFIIS_CENTRAL 34.059 201-324
superfamily SSF46942 Elongation 1.8e-26 180-300
IPR006289 Transcription elongation factor, TFIIS
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006351 transcription, DNA-dependent    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMTigr TIGR01385 TFSII: 4.3e-97 13-369
IPR016492 Transcription elongation factor, TFIIS-related
Biological Process GO:0006357 regulation of transcription from RNA polymerase II promoter    
Biological Process GO:0032784 regulation of DNA-dependent transcription, elongation    
HMMPIR PIRSF006704 Transcription 2.5e-119 2-369
IPR017890 Transcription elongation factor S-IIM
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00510 Domain 5.4e-40 199-307
IPR017923 Transcription factor IIS, N-terminal
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006351 transcription, DNA-dependent    
Gene3D G3DSA:1.20.930.10 no description 3.4e-12 11-96
HMMPfam PF08711 Med26 2.7e-09 34-83
ProfileScan PS51319 TFIIS_N 18.690 1-86
superfamily SSF47676 Conserved 1.1e-15 1-100
no_ID  
Coil coil coiled-coil NA 191-212
291-312
Gene3D G3DSA:2.20.25.10 no description 6.1e-22 302-369
HMMPanther PTHR11477 TRANSCRIPTION 1.2e-84 6-369
Seg seg seg NA 11-24
118-130
169-187
299-311
superfamily SSF57783 Zinc 9.7e-18 306-367
Wolf-PSORT
Lj1g3v1134040.1	chlo 5, nucl 5, cyto 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1134040.1