Miyakogusa Predicted Gene

Lj1g3v1079520.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C0A1G9_LOTJA 712 98.6 98.6 (tr|C0A1G9) WD40 repeats protein LjTTG1 OS=Lotus japonicus GN=LjTTG1 PE=2 SV=1
TAIR_pep AT5G24520.2 562 77.5 87.2 | Symbols: TTG1, TTG | Transducin/WD40 repeat-like superfamily protein | chr5:8371708-8372733 REVERSE LENGTH=341
Medicago Medtr3g092840.1 630 87.4 93.1 | transparent testa glabra protein | HC | chr3:42443433-42441118 | 20130731
Soybean Glyma04g40610.1 587 82.5 88.8  
LJGI gnl|LJGI|TC74377 2081 100.0 100.0 homologue to UniRef100_A5HMS8 Cluster: Transcription factor WD-repeat protein 1; n=1; Caragana jubata|Rep: Transcription factor WD-repeat protein 1 - Caragana jubata, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1079520.1 length: 349 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.3000000000000007E-5 176-210
264-301
HMMSmart SM00320 WD40 4.799997768362738E-8 73-119
130-169
172-210
261-301
ProfileScan PS50082 WD_REPEATS_2 0.0 179-219
268-302
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10G3DSA:2.130.10.10 T[23-340] 3.899999999762035E-36  
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 0.0 136-310
superfamily SSF50978 WD40_like 6.700026301588832E-34 24-301
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 0.0 156-170
288-302
no_ID  
HMMPanther PTHR19919 PTHR19919 0.0 17-349
Wolf-PSORT
Lj1g3v1079520.1	nucl 7, cyto 3, plas 2, cyto_pero 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1079520.1