Miyakogusa Predicted Gene
- Lj1g3v1073610.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T312_LOTJA |
188 |
98.9 |
98.9 |
(tr|I3T312) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G32790.1 |
166 |
84.8 |
91.3 |
| Symbols: CID11 | CTC-interacting domain 11 | chr1:11875174-11877188 REVERSE LENGTH=358 |
| Medicago |
Medtr3g092550.1 |
172 |
85.9 |
96.7 |
| CTC-interacting domain protein | HC | chr3:42290596-42284870 | 20130731 |
| Soybean |
Glyma06g14030.1 |
174 |
90.2 |
95.7 |
|
| LJGI |
gnl|LJGI|TC81719 |
545 |
99.6 |
99.6 |
similar to UniRef100_Q0WQ17 Cluster: RNA-binding-like protein; n=1; Arabidopsis thaliana|Rep: RNA-binding-like protein - Arabidopsis thaliana (Mouse-ear cress), partial (57%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v1073610.2 |
length: 92 aa. |
| IPR000504 |
RNA recognition motif domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| HMMPfam |
PF00076 |
RRM_1 |
1.8e-11 |
6-73 |
| HMMSmart |
SM00360 |
RNA |
1.4e-12 |
5-76 |
| ProfileScan |
PS50102 |
RRM |
12.560 |
4-80 |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
5.8e-13 |
3-76 |
| no_ID |
|
| HMMPanther |
PTHR24011 |
FAMILY |
1.7e-47 |
1-88 |
| HMMPanther |
PTHR24011:SF12 |
SUBFAMILY |
1.7e-47 |
1-88 |
| superfamily |
SSF54928 |
RNA-binding |
4e-15 |
4-79 |
- Wolf-PSORT
Lj1g3v1073610.2 nucl 5, cyto 4, chlo 3, mito 1, extr 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v1073610.2 |
|