Miyakogusa Predicted Gene

Lj1g3v1063550.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J8B0_MEDTR 508 78.1 85.1 (tr|G7J8B0) Splicing factor, arginine/serine-rich OS=Medicago truncatula GN=MTR_3g092510 PE=4 SV=1
TAIR_pep AT3G49390.2 330 55.0 67.3 | Symbols: CID10 | CTC-interacting domain 10 | chr3:18314901-18317658 REVERSE LENGTH=353
Medicago Medtr3g092510.1 509 78.1 85.1 | CTC-interacting domain protein | HC | chr3:42267137-42262435 | 20130731
Soybean Glyma04g40750.2 501 79.7 85.6  
LJGI gnl|LJGI|TC61411 1776 99.2 99.2 similar to UniRef100_A7QEW4 Cluster: Chromosome chr16 scaffold_86, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr16 scaffold_86, whole genome shotgun sequence - Vitis vinifera (Grape), partial (65%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1063550.1 length: 314 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.2e-12 186-251
HMMSmart SM00360 RNA 9.8e-15 185-255
ProfileScan PS50102 RRM 13.686 184-259
IPR009818 Ataxin-2, C-terminal
HMMPfam PF07145 PAM2 3.6e-05 111-124
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.8e-16 172-254
no_ID  
HMMPanther PTHR24011 FAMILY 1.3e-101 155-314
HMMPanther PTHR24011:SF12 SUBFAMILY 1.3e-101 155-314
superfamily SSF54928 RNA-binding 5.9e-21 183-313
Wolf-PSORT
Lj1g3v1063550.1	nucl 8, cyto 4, nucl_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1063550.1