Miyakogusa Predicted Gene

Lj1g3v1049420.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LTI8_SOYBN 1152 88.0 93.0 (tr|I1LTI8) Uncharacterized protein OS=Glycine max PE=3 SV=1

TAIR_pep AT5G60600.3 1068 80.5 89.2 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | chr5:24359447-24363019 FORWARD LENGTH=717

Medicago Medtr2g094160.1 1124 86.6 91.5 | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | HC | chr2:40157717-40163066 | 20130731

Soybean Glyma12g29590.2 1152 88.0 93.0

LJGI gnl|LJGI|TC59877 1322 99.7 99.7 similar to UniRef100_Q8GZR6 Cluster: GcpE; n=1; Solanum lycopersicum|Rep: GcpE - Solanum lycopersicum (Tomato) (Lycopersicon esculentum), partial (30%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v1049420.1 length: 648 aa.

IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type

method AccNumber shortName E-value location

Biological Process GO:0016114 terpenoid biosynthetic process

Molecular Function GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity

Biological Process GO:0055114 oxidation-reduction process

HAMAP MF_00159 IspG 28.945 82-566

HMMPfam PF04551 GcpE 2.5e-112 87-368

HMMTigr TIGR00612 ispG_gcpE: 1.9e-103 84-369

IPR017178 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical

Molecular Function GO:0005506 iron ion binding

Biological Process GO:0008299 isoprenoid biosynthetic process

Molecular Function GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity

Biological Process GO:0055114 oxidation-reduction process

HMMPIR PIRSF037336 4-hydroxy-3-methylbut-2-en-1-yl 7.1e-240 1-648

no_ID

Coil coil coiled-coil NA 198-219

HMMPanther PTHR30454 4-HYDROXY-3-METHYLBUT-2-EN-1-YL 6.6e-169 58-632

Wolf-PSORT

Lj1g3v1049420.1 cyto 9, chlo 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1049420.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LTI8_SOYBN	1152	88.0	93.0	(tr\|I1LTI8) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep	AT5G60600.3	1068	80.5	89.2	\| Symbols: GCPE, ISPG, CSB3, CLB4, HDS \| 4-hydroxy-3-methylbut-2-enyl diphosphate synthase \| chr5:24359447-24363019 FORWARD LENGTH=717
Medicago	Medtr2g094160.1	1124	86.6	91.5	\| 4-hydroxy-3-methylbut-2-enyl diphosphate synthase \| HC \| chr2:40157717-40163066 \| 20130731
Soybean	Glyma12g29590.2	1152	88.0	93.0
LJGI	gnl\|LJGI\|TC59877	1322	99.7	99.7	similar to UniRef100_Q8GZR6 Cluster: GcpE; n=1; Solanum lycopersicum\|Rep: GcpE - Solanum lycopersicum (Tomato) (Lycopersicon esculentum), partial (30%)

IPR004588	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
Lj1g3v1049420.1				length: 648 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0016114	terpenoid biosynthetic process
Molecular Function	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
Biological Process	GO:0055114	oxidation-reduction process
HAMAP	MF_00159	IspG	28.945	82-566
HMMPfam	PF04551	GcpE	2.5e-112	87-368
HMMTigr	TIGR00612	ispG_gcpE:	1.9e-103	84-369
IPR017178	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical
Molecular Function	GO:0005506	iron ion binding
Biological Process	GO:0008299	isoprenoid biosynthetic process
Molecular Function	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
Biological Process	GO:0055114	oxidation-reduction process
HMMPIR	PIRSF037336	4-hydroxy-3-methylbut-2-en-1-yl	7.1e-240	1-648
no_ID
Coil	coil	coiled-coil	NA	198-219
HMMPanther	PTHR30454	4-HYDROXY-3-METHYLBUT-2-EN-1-YL	6.6e-169	58-632