Miyakogusa Predicted Gene

Lj1g3v1032230.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7J864_MEDTR 729 77.8 86.2 (tr|G7J864) Mitochondrial chaperone BCS1 OS=Medicago truncatula GN=MTR_3g092060 PE=4 SV=1

TAIR_pep AT2G46620.1 453 52.1 65.6 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:19139071-19140546 REVERSE LENGTH=491

Medicago Medtr3g092060.1 728 77.8 86.2 | P-loop nucleoside triphosphate hydrolase superfamily protein | HC | chr3:42019572-42017669 | 20130731

Soybean Glyma04g41060.1 702 75.6 84.0

LJGI gnl|LJGI|TC74731 1041 100.0 100.0 similar to UniRef100_A7PXQ1 Cluster: Chromosome chr15 scaffold_37, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr15 scaffold_37, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v1032230.1 length: 481 aa.

IPR003593 AAA+ ATPase domain

method AccNumber shortName E-value location

Molecular Function GO:0000166 nucleotide binding

Molecular Function GO:0017111 nucleoside-triphosphatase activity

HMMSmart SM00382 ATPases 0.00081 217-347

IPR003959 ATPase, AAA-type, core

Molecular Function GO:0005524 ATP binding

HMMPfam PF00004 AAA 1.5e-11 222-345

IPR018247 EF-Hand 1, calcium-binding site

PatternScan PS00018 EF_HAND_1 NA 248-260

IPR025753 AAA-type ATPase, N-terminal domain

HMMPfam PF14363 AAA_assoc 7.1e-08 34-119

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 2.1e-39 147-407

no_ID

Gene3D G3DSA:3.40.50.300 no description 3.8e-27 198-342

HMMPanther PTHR23070 BCS1 1.1e-132 1-408

HMMPanther PTHR23070:SF1 AAA-TYPE 1.1e-132 1-408

Seg seg seg NA 1-24
126-137
287-299

Putative transmembrane regions

From To

TM segments
SOSUI 2 23

Wolf-PSORT

Lj1g3v1032230.1 chlo 10, extr 2, nucl 1, vacu 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1032230.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7J864_MEDTR	729	77.8	86.2	(tr\|G7J864) Mitochondrial chaperone BCS1 OS=Medicago truncatula GN=MTR_3g092060 PE=4 SV=1
TAIR_pep	AT2G46620.1	453	52.1	65.6	\| Symbols: \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:19139071-19140546 REVERSE LENGTH=491
Medicago	Medtr3g092060.1	728	77.8	86.2	\| P-loop nucleoside triphosphate hydrolase superfamily protein \| HC \| chr3:42019572-42017669 \| 20130731
Soybean	Glyma04g41060.1	702	75.6	84.0
LJGI	gnl\|LJGI\|TC74731	1041	100.0	100.0	similar to UniRef100_A7PXQ1 Cluster: Chromosome chr15 scaffold_37, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr15 scaffold_37, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)

IPR003593	AAA+ ATPase domain
Lj1g3v1032230.1				length: 481 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0000166	nucleotide binding
Molecular Function	GO:0017111	nucleoside-triphosphatase activity
HMMSmart	SM00382	ATPases	0.00081	217-347
IPR003959	ATPase, AAA-type, core
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00004	AAA	1.5e-11	222-345
IPR018247	EF-Hand 1, calcium-binding site
PatternScan	PS00018	EF_HAND_1	NA	248-260
IPR025753	AAA-type ATPase, N-terminal domain
HMMPfam	PF14363	AAA_assoc	7.1e-08	34-119
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	2.1e-39	147-407
no_ID
Gene3D	G3DSA:3.40.50.300	no description	3.8e-27	198-342
HMMPanther	PTHR23070	BCS1	1.1e-132	1-408
HMMPanther	PTHR23070:SF1	AAA-TYPE	1.1e-132	1-408
Seg	seg	seg	NA	1-24 126-137 287-299