Miyakogusa Predicted Gene
- Lj1g3v1008860.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
database |
Accession |
Score |
Iden (%) |
Posi (%) |
Definition |
TrEMBL |
I1KAW1_SOYBN |
1259 |
84.6 |
91.9 |
(tr|I1KAW1) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
TAIR_pep |
AT4G27730.1 |
1100 |
71.1 |
86.3 |
| Symbols: ATOPT6, OPT6 | oligopeptide transporter 1 | chr4:13834024-13836468 REVERSE LENGTH=736 |
Medicago |
Medtr3g080870.1 |
1088 |
71.4 |
84.2 |
| oligopeptide transporter OPT family protein | HC | chr3:36608789-36602876 | 20130731 |
Soybean |
Glyma04g41140.1 |
1259 |
84.8 |
91.6 |
|
LJGI |
gnl|LJGI|TC63492 |
1049 |
100.0 |
100.0 |
similar to UniRef100_A7QEZ6 Cluster: Chromosome chr16 scaffold_86, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_86, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%) |
- A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1008860.1 |
length: 735 aa. |
IPR004648 |
Tetrapeptide transporter, OPT1/isp4 |
method |
AccNumber |
shortName |
E-value |
location |
Biological Process |
GO:0055085 |
transmembrane transport |
|
|
HMMTigr |
TIGR00727 |
ISP4_OPT: |
5.3e-186 |
19-701 |
IPR004813 |
Oligopeptide transporter, OPT superfamily |
Biological Process |
GO:0055085 |
transmembrane transport |
|
|
HMMPfam |
PF03169 |
OPT |
5.4e-181 |
42-698 |
HMMTigr |
TIGR00728 |
OPT_sfam: |
4.5e-209 |
27-700 |
no_ID |
|
HMMPanther |
PTHR22601 |
ISP4 |
0 |
16-735 |
Seg |
seg |
seg |
NA |
6-21 |
- Putative transmembrane regions
|
From |
To |
TM segments
SOSUI |
43 |
65 |
72 |
94 |
151 |
172 |
213 |
235 |
285 |
307 |
360 |
382 |
415 |
437 |
445 |
466 |
491 |
513 |
528 |
550 |
601 |
623 |
647 |
668 |
687 |
709 |
- Wolf-PSORT
Lj1g3v1008860.1 plas 10, chlo 1, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
Lj1g3v1008860.1 |
Not targeted |
-36.926 |
-0.010 |
-4.321 |
46.18% |
-32.595
|