Miyakogusa Predicted Gene

Lj1g3v1008810.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SLA2_LOTJA 436 99.5 99.5 (tr|I3SLA2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G21320.2 164 42.4 56.7 | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7466164 REVERSE LENGTH=253
Medicago Medtr3g091860.1 347 78.6 87.0 | RNA-binding protein with multiple splicing protein | HC | chr3:41912150-41919016 | 20130731
Soybean Glyma04g41150.3 389 86.5 93.5  
LJGI gnl|LJGI|TC61636 1392 100.0 100.0 similar to UniRef100_A7QEZ7 Cluster: Chromosome chr16 scaffold_86, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_86, whole genome shotgun sequence - Vitis vinifera (Grape), partial (62%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1008810.2 length: 232 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 6.2e-11 133-201
HMMSmart SM00360 RNA 2.8e-06 132-206
ProfileScan PS50102 RRM 11.503 131-217
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 4.7e-17 124-216
IPR024888 U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''
Biological Process GO:0000398 mRNA splicing, via spliceosome    
Molecular Function GO:0017069 snRNA binding    
HMMPanther PTHR10501 U1 2.9e-27 24-223
no_ID  
HMMPanther PTHR10501:SF0 SMALL 2.9e-27 24-223
Seg seg seg NA 216-232
superfamily SSF54928 RNA-binding 6.8e-12 117-223
Wolf-PSORT
Lj1g3v1008810.2	nucl 11.5, nucl_plas 6.5, chlo 1, extr 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1008810.2